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The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459

SYSNO ASEP	0561992
Druh ASEP	J - Článek v odborném periodiku
Zařazení RIV	J - Článek v odborném periodiku
Poddruh J	Článek ve WOS
Název	The transcriptomic (RNA-Sequencing) datasets collected in the course of floral induction in Chenopodium ficifolium 459
Tvůrce(i)	Gutiérrez-Larruscain, David (UEB-Q)_ORCID Krüger, Manuela (UEB-Q)_ORCID Abeyawardana, Oushadee A.J. (UEB-Q)_ORCID Belz, Claudia (UEB-Q)_ORCID Dobrev, Petre (UEB-Q)_{RID, ORCID} Vaňková, Radomíra (UEB-Q)_{RID, ORCID} Eliášová, Kateřina (UEB-Q)_{RID, ORCID} Vondráková, Zuzana (UEB-Q)_{RID, ORCID} Juříček, Miloslav (UEB-Q)_{RID, ORCID} Štorchová, Helena (UEB-Q)_{RID, ORCID}
Celkový počet autorů	10
Číslo článku	108333
Zdroj.dok.	Data in Brief. - : Elsevier - ISSN 2352-3409 Roč. 43, AUG (2022)
Poč.str.	9 s.
Jazyk dok.	eng - angličtina
Země vyd.	DE - Německo
Klíč. slova	Flowering ; Gene expression ; Oxidative stress ; Photoperiod ; Phytohormones
Obor OECD	Plant sciences, botany
CEP	GA19-01639S GA ČR - Grantová agentura ČR
	EF16_019/0000738 GA MŠMT - Ministerstvo školství, mládeže a tělovýchovy
Způsob publikování	Open access
Institucionální podpora	UEB-Q - RVO:61389030
UT WOS	000832310400032
EID SCOPUS	85131422472
DOI	10.1016/j.dib.2022.108333
Anotace	The transition from vegetative growth to reproduction is the essential commitment in plant life. It is triggered by environmental cues (day length, temperature, nutrients) and regulated by the very complex signaling gene network and by phytohormones. The control of flowering is well understood in Arabidopsis thaliana and in some crops, much less is known about the other angiosperms. We performed the detailed transcriptomic survey of the course of floral induction in seedlings of Chenopodium ficifolium accession 459, a close relative of the important crop Chenopodium quinoa. It flowers earlier under short days (6 hours light) than under long days (18 hours light). Plants were sampled at the age 14, 18, 21 and 24 days in the morning and afternoon, both at long and short day, for RNA-Sequencing, and also for phytohormone analyses. We employed Illumina NovaSeq6000 platform to generate raw reads, which were cleaned and mapped against the de novo constructed transcriptome of C. ficifolium. The global gene expression levels between long and short days were pairwise compared at each time points. We identified differentially expressed genes associated with floral induction in C. ficifolium 459. Particular attention was paid to the genes responsible for phytohormone metabolism and signaling. The datasets produced by this project contributed to better understanding of the regulation of growth and development in the genus Chenopodium.
Pracoviště	Ústav experimentální botaniky
Kontakt	David Klier, knihovna@ueb.cas.cz, Tel.: 220 390 469
Rok sběru	2023
Elektronická adresa	https://doi.org/10.1016/j.dib.2022.108333

Počet záznamů: 1