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Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen
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SYSNO ASEP 0453402 Druh ASEP J - Článek v odborném periodiku Zařazení RIV J - Článek v odborném periodiku Poddruh J Článek ve WOS Název Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen Tvůrce(i) Lin, R.-H. (CN)
Lai, D.-H. (CN)
Zheng, L.-L. (CN)
Wu, J. (CN)
Lukeš, Julius (BC-A) RID, ORCID
Hide, G. (GB)
Lun, Z.-R. (CN)Zdroj.dok. Parasites & Vectors. - : BioMed Central - ISSN 1756-3305
Roč. 8, 30 December 2015 (2015), s. 665Poč.str. 11 s. Forma vydání Online - E Jazyk dok. eng - angličtina Země vyd. GB - Velká Británie Klíč. slova Trypanosoma lewisi ; Kinetoplast maxicircle ; Mitochondrial DNA ; RNA editing ; Palindrome Vědní obor RIV EB - Genetika a molekulární biologie Institucionální podpora BC-A - RVO:60077344 UT WOS 000367326000001 DOI 10.1186/s13071-015-1281-8 Anotace In this study, purified kinetoplast DNA from T. lewisi was sequenced using high-throughput sequencing in combination with sequencing of PCR amplicons. This allowed the assembly of the T. lewisi kinetoplast maxicircle DNA, which is a homologue of the mitochondrial genome in other eukaryotes. The assembly of 23,745 bp comprises the non-coding and coding regions. Comparative analysis of the maxicircle sequence of T. lewisi with Trypanosoma cruzi, Trypanosoma rangeli, Trypanosoma brucei and Leishmania tarentolae revealed that it shares 78 %, 77 %, 74 % and 66 % sequence identity with these parasites, respectively. The high GC content in at least 9 maxicircle genes of T. lewisi (ATPase6; NADH dehydrogenase subunits ND3, ND7, ND8 and ND9; G-rich regions GR3 and GR4; cytochrome oxidase subunit COIII and ribosomal protein RPS12) implies that their products may be extensively edited. A detailed analysis of the non-coding region revealed that it contains numerous repeat motifs and palindromes. Pracoviště Biologické centrum (od r. 2006) Kontakt Dana Hypšová, eje@eje.cz, Tel.: 387 775 214 Rok sběru 2016
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