Počet záznamů: 1
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization
- 1.0560041 - BFÚ 2023 RIV GB eng J - Článek v odborném periodiku
Lexa, Matej - Čechová, M. - Nguyen, S. H. - Jedlička, Pavel - Tokan, Viktor - Kubát, Zdeněk - Hobza, Roman - Kejnovský, Eduard
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Bioinformatics. Roč. 38, č. 16 (2022), s. 4030-4032. ISSN 1367-4803. E-ISSN 1460-2059
Grant CEP: GA ČR(CZ) GA21-00580S
Institucionální podpora: RVO:68081707
Klíčová slova: TRANSPOSABLE ELEMENTS * SEQUENCE
Obor OECD: Biochemistry and molecular biology
Impakt faktor: 5.8, rok: 2022
Způsob publikování: Open access
https://academic.oup.com/bioinformatics/article/38/16/4030/6628581?login=true
Motivation: The role of repetitive DNA in the 3D organization of the interphase nucleus is a subject of intensive study. In studies of 3D nucleus organization, mutual contacts of various loci can be identified by Hi-C sequencing. Typical analyses use binning of read pairs by location to reduce noise. We use binning by repeat families instead to make similar conclusions about repeat regions.
Trvalý link: https://hdl.handle.net/11104/0340534
Počet záznamů: 1