TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting

0539921 - BFÚ 2021 RIV GB eng J - Článek v odborném periodiku
Lexa, Matej - Jedlička, Pavel - Vanat, I. - Červeňanský, Michal - Kejnovský, Eduard
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinformatics. Roč. 36, č. 20 (2020), s. 4991-4999. ISSN 1367-4803. E-ISSN 1460-2059
Grant CEP: GA ČR(CZ) GA18-00258S
Institucionální podpora: RVO:68081707
Klíčová slova: transposable elements * visualization * annotation * identification * paleontology
Obor OECD: Biochemical research methods
Impakt faktor: 6.937, rok: 2020
Způsob publikování: Open access
https://academic.oup.com/bioinformatics/article/36/20/4991/5871348

Motivation: Transposable elements (TEs) in eukaryotes often get inserted into one another, forming sequences that become a complex mixture of full-length elements and their fragments. The reconstruction of full-length elements and the order in which they have been inserted is important for genome and transposon evolution studies. However, the accumulation of mutations and genome rearrangements over evolutionary time makes this process error-prone and decreases the efficiency of software aiming to recover all nested full-length TEs.
Trvalý link: http://hdl.handle.net/11104/0317612