Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems

0359469 - ÚVGZ 2012 RIV NL eng M - Část monografie knihy
Nedbal, Ladislav - Červený, Jan - Schmidt, H.
Scaling and Integration of Kinetic Models of Photosynthesis.Towards Comprehensive E-Photosynthesis.
Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems. Dordrecht: Springer, 2009 - (Laisk, A.; Nedbal, L.; Govindjee), s. 17-28. ISBN 978-1-4020-9236-7
Výzkumný záměr: CEZ:AV0Z60870520
Klíčová slova: complexity * mathematical models * photosynthesis * dimensionality reduction * silico
Kód oboru RIV: EF - Botanika

Photosynthesis as it occurs in a natural environment reflects not only the primary biophysical and biochemical reactions but also a network of regulatory interactions that act across timescales and spatial boundaries. Modeling such a tightly regulated biosystem is feasible when the model is reduced to describe only a rather particular experimental situation such as fluorescence response to a single turnover light flash or the dynamics around the steady-state of CB cycle. In this chapter we propose the Comprehensive Modeling Space (CMS) where the partial photosynthesis models would be shared by means of SBML language, which is the de-facto standard for the formal representation of biochemical models. Models validity is defined by an extension of MIRIAM standard. The hierarchy and connectivity of the partial models within the CMS is determined by rigorous dimensionality reduction techniques. We exemplify the principles of the comprehensive modeling approach based on partial models of the PS II.
Trvalý link: http://hdl.handle.net/11104/0197254