Search results
- 1.0569371 - BFÚ 2023 RIV GB eng J - Journal Article
Kejnovský, Eduard - Jedlička, Pavel
Nucleic acids movement and its relation to genome dynamics of repetitive DNA Is cellular and intercellular movement of DNA and RNA molecules related to the evolutionary dynamic genome components?
BioEssays. Roč. 44, č. 4 (2022), č. článku e2100242. ISSN 0265-9247. E-ISSN 1521-1878
R&D Projects: GA ČR(CZ) GA18-00258S; GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : dna * genome dynamics * horizontal gene transfer * migration * movement * small RNA * transposable elements
OECD category: Biochemistry and molecular biology
Impact factor: 4, year: 2022
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/10.1002/bies.202100242
Permanent Link: https://hdl.handle.net/11104/0340689 - 2.0568619 - BC 2023 RIV GB eng J - Journal Article
Schley, R. J. - Pellicer, J. - Ge, X. - Barrett, C. - Bellot, S. - Guignard, M. S. - Novák, Petr - Suda, Jan - Fraser, D. - Baker, W. J. - Dodsworth, S. - Macas, Jiří - Leitch, A. R. - Leitch, I. J.
The ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity.
New Phytologist. Roč. 236, č. 2 (2022), s. 433-446. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:67985939
Keywords : adaptation * Arecaceae (palms) * ecology * genome size * phylogenetic regression * plant evolution * trait evolution * transposable elements
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (BU-J)
Impact factor: 9.4, year: 2022
Method of publishing: Open access
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.18323
Permanent Link: https://hdl.handle.net/11104/0339892 - 3.0568618 - BC 2023 RIV US eng J - Journal Article
Hofstatter, P. G. - Thangavel, G. - Lux, T. - Neumann, Pavel - Vondrak, Tihana - Novák, Petr - Zhang, M. - Costa, L. - Castellani, M. - Scott, A. - Toegelová, Helena - Fuchs, J. - Mata-Sucre, Y. - Dias, Y. - Vanzela, A.L.L. - Huettel, B. - Almeida, C. C. S. - Šimková, Hana - Souza, G. - Pedrosa-Harand, A. - Macas, Jiří - Mayer, K. F. X. - Houben, A. - Marques, A.
Repeat-based holocentromeres influence genome architecture and karyotype evolution.
Cell. Roč. 185, č. 17 (2022), s. 3153-3168. ISSN 0092-8674. E-ISSN 1097-4172
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:61389030
Keywords : spatial genome organization * holocentric chromosomes * genome regulation * centromere * Rhynchospora * transposable elements * whole-genome duplication
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
Impact factor: 64.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0092867422007978?via%3Dihub#kwrds0010
Permanent Link: https://hdl.handle.net/11104/0339891 - 4.0562790 - ÚEB 2023 RIV DE eng J - Journal Article
Varotto, S. - Krugman, T. - Aiese Cigliano, R. - Kashkush, K. - Kondić-Špika, A. - Aravanopoulos, F. A. - Pradillo, M. - Consiglio, F. - Aversano, R. - Pečinka, Aleš - Miladinović, D.
Exploitation of epigenetic variation of crop wild relatives for crop improvement and agrobiodiversity preservation.
Theoretical and Applied Genetics. Roč. 135, č. 11 (2022), s. 3987-4003. ISSN 0040-5752. E-ISSN 1432-2242
Institutional support: RVO:61389030
Keywords : DNA METHYLATION VARIATION * EMMER WHEAT POPULATIONS * TRANSPOSABLE ELEMENTS
OECD category: Biochemical research methods
Impact factor: 5.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1007/s00122-022-04122-y
Permanent Link: https://hdl.handle.net/11104/0336846File Download Size Commentary Version Access 2022_Varotto_THEORETICAL AND APPLIED GENETICS_3987.pdf 1 1 MB Other open-access - 5.0561925 - BÚ 2023 RIV US eng J - Journal Article
Sammarco, Iris - Pieters, Janto - Salony, S. - Toman, I. - Zolotarov, G. - Lafon Placette, C.
Epigenetic targeting of transposon relics: beating the dead horses of the genome?
Epigenetics. Roč. 17, č. 11 (2022), s. 1331-1344. ISSN 1559-2294. E-ISSN 1559-2308
EU Projects: European Commission(XE) 764965 - EPIDIVERSE
Institutional support: RVO:67985939 ; RVO:61389030
Keywords : transposable elements * epigenetic silencing * host genome defence * adaptive epimutations * transposable elements relics
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.7, year: 2022
Method of publishing: Limited access
https://doi.org/10.1080/15592294.2021.2022066
Permanent Link: https://hdl.handle.net/11104/0336628 - 6.0560041 - BFÚ 2023 RIV GB eng J - Journal Article
Lexa, Matej - Čechová, M. - Nguyen, S. H. - Jedlička, Pavel - Tokan, Viktor - Kubát, Zdeněk - Hobza, Roman - Kejnovský, Eduard
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Bioinformatics. Roč. 38, č. 16 (2022), s. 4030-4032. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA21-00580S
Institutional support: RVO:68081707
Keywords : TRANSPOSABLE ELEMENTS * SEQUENCE
OECD category: Biochemistry and molecular biology
Impact factor: 5.8, year: 2022
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/38/16/4030/6628581?login=true
Permanent Link: https://hdl.handle.net/11104/0340534 - 7.0555388 - BFÚ 2022 RIV CH eng J - Journal Article
Herklotz, V. - Kovařík, Aleš - Wissemann, V. - Lunerová Bedřichová, Jana - Vozárová, Radka - Buschmann, B. - Olbricht, K. - Groth, M. - Ritz, C.
Power and Weakness of Repetition Evaluating the Phylogenetic Signal From Repeatomes in the Family Rosaceae With Two Case Studies From Genera Prone to Polyploidy and Hybridization (Rosa and Fragaria).
Frontiers in Plant Science. Roč. 12, DEC 7 2021 (2021), č. článku 738119. ISSN 1664-462X. E-ISSN 1664-462X
R&D Projects: GA ČR(CZ) GC20-14133J
Institutional support: RVO:68081707
Keywords : transposable elements * section caninae * genus rosa * dna-sequences * ribosomal dna * wild roses * genome
OECD category: Plant sciences, botany
Impact factor: 6.627, year: 2021
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fpls.2021.738119/full
Permanent Link: http://hdl.handle.net/11104/0329905 - 8.0544549 - BFÚ 2022 RIV NL eng J - Journal Article
Brázda, Václav - Bartas, M. - Bowater, R. P.
Evolution of Diverse Strategies for Promoter Regulation.
Trends in Genetics. Roč. 37, č. 8 (2021), s. 730-744. ISSN 0168-9525. E-ISSN 1362-4555
R&D Projects: GA ČR(CZ) GA18-15548S
Institutional support: RVO:68081707
Keywords : inverted repeat sequences * g-quadruplex structures * dna g-quadruplex * non-b dna * gene-regulation * transposable elements
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 11.821, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0168952521000846
Permanent Link: http://hdl.handle.net/11104/0321397 - 9.0539921 - BFÚ 2021 RIV GB eng J - Journal Article
Lexa, Matej - Jedlička, Pavel - Vanat, I. - Červeňanský, Michal - Kejnovský, Eduard
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinformatics. Roč. 36, č. 20 (2020), s. 4991-4999. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA ČR(CZ) GA18-00258S
Institutional support: RVO:68081707
Keywords : transposable elements * visualization * annotation * identification * paleontology
OECD category: Biochemical research methods
Impact factor: 6.937, year: 2020
Method of publishing: Open access
https://academic.oup.com/bioinformatics/article/36/20/4991/5871348
Permanent Link: http://hdl.handle.net/11104/0317612 - 10.0539877 - BFÚ 2021 RIV CH eng J - Journal Article
Jedlička, Pavel - Lexa, M. - Kejnovský, Eduard
What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?
Frontiers in Plant Science. Roč. 11, MAY 20 2020 (2020), č. článku 644. ISSN 1664-462X. E-ISSN 1664-462X
R&D Projects: GA ČR(CZ) GA18-00258S
Institutional support: RVO:68081707
Keywords : rna-mediated recombination * transposable elements * genome size * evolution * rice * plants
OECD category: Plant sciences, botany
Impact factor: 5.754, year: 2020
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fpls.2020.00644/full
Permanent Link: http://hdl.handle.net/11104/0317575