Search results
- 1.0536199 - BFÚ 2023 RIV DE eng J - Journal Article
Broft, P. - Dzatko, S. - Krafčíková, Michaela - Wacker, A. - Haensel-Hertsch, R. - Dotsch, V. - Trantírek, L. - Schwalbe, H.
In-Cell NMR Spectroscopy of Functional Riboswitch Aptamers in Eukaryotic Cells.
Angewandte Chemie - International Edition. Roč. 60, č. 2 (2021), s. 865-872. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : g-quadruplex structures * sensing riboswitch * ligand-binding * structural basis * rna * dna * proteins
OECD category: Analytical chemistry
Impact factor: 16.823, year: 2021
Method of publishing: Open access with time embargo
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/anie.202007184
Permanent Link: http://hdl.handle.net/11104/0314006 - 2.0447671 - ÚOCHB 2016 RIV US eng J - Journal Article
Haldar, Susanta - Kührová, P. - Banáš, P. - Spiwok, V. - Šponer, Jiří - Hobza, Pavel - Otyepka, M.
Insights into Stability and Folding of GNRA and UNCG Tetra loops Revealed by Microsecond Molecular Dynamics and Well-Tempered Metadynamics.
Journal of Chemical Theory and Computation. Roč. 11, č. 8 (2015), s. 3866-3877. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA ČR GAP208/12/1878; GA ČR GBP208/12/G016
Grant - others:GA MŠk(CZ) ED2.1.00/03.0058; GA MŠk(CZ) EE2.3.20.0058; GA MŠk(CZ) EE2.3.20.0155; GA MŠk(CZ) LO1305
Program: ED
Institutional support: RVO:61388963 ; RVO:68081707
Keywords : free energy landscape * di-GMP riboswitch * RNA hairpins
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.301, year: 2015
Permanent Link: http://hdl.handle.net/11104/0249449 - 3.0389524 - BFÚ 2013 RIV US eng J - Journal Article
Banáš, Pavel - Sklenovský, P. - Wedekind, J.E. - Šponer, Jiří - Otyepka, Michal
Molecular Mechanism of preQ(1) Riboswitch Action: A Molecular Dynamics Study.
Journal of Physical Chemistry B. Roč. 116, č. 42 (2012), s. 12721-12734. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR(CZ) GD203/09/H046; GA ČR(CZ) GA203/09/1476; GA ČR(CZ) GAP208/12/1878; GA ČR(CZ) GBP305/12/G034
Grant - others:GA ČR(CZ) GBP208/12/G016
Program: GB
Institutional support: RVO:68081707
Keywords : HEPATITIS-DELTA VIRUS * PARTICLE MESH EWALD * SAM-II RIBOSWITCH
Subject RIV: BO - Biophysics; BO - Biophysics (BFU-R)
Impact factor: 3.607, year: 2012
Permanent Link: http://hdl.handle.net/11104/0218381 - 4.0373421 - BFÚ 2012 RIV US eng J - Journal Article
Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046
Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006883 - 5.0347709 - BFÚ 2011 RIV US eng J - Journal Article
Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581
Grant - others:GA MŠk(CZ) LC512
Program: LC
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006029