Search results

  1. 1.
    0557136 - ÚOCHB 2023 CZ eng A - Abstract
    Osifová, Zuzana - Šála, Michal - Dračínský, Martin
    Hydrogen-bonding interactions of 8-oxopurine nucleobases.
    35th NMR Valtice. Central European NMR Meeting. Brno: Tribun EU, 2022 - (Novotný, J.; Marek, R.). C29. ISBN 9788026317173.
    [NMR Valtice. Central European NMR Meeting /35./. 24.04.2022-27.04.2022, Valtice]
    Institutional support: RVO:61388963
    Keywords : hydrogen bonds * 8-oxopurine * NMR spectroscopy * nucleic acids
    OECD category: Organic chemistry
    Permanent Link: http://hdl.handle.net/11104/0331194
     
     
  2. 2.
    0556384 - MBÚ 2023 RIV NL eng J - Journal Article
    Fadaei, Fatemeh - Tortora, M. - Gessini, A. - Masciovecchio, C. - Catalini, S. - Vigna, J. - Mancini, I. - Mele, A. - Vacek, J. - Řeha, David - Minofar, Babak - Rossi, B.
    Structural specificity of groove binding mechanism between imidazolium-based ionic liquids and DNA revealed by synchrotron-UV Resonance Raman spectroscopy and molecular dynamics simulations.
    Journal of Molecular Liquids. Roč. 347, FEB 1 2022 (2022), č. článku 118350. ISSN 0167-7322. E-ISSN 1873-3166
    Research Infrastructure: e-INFRA CZ - 90140
    Institutional support: RVO:61388971
    Keywords : nucleic-acids * minor-groove * initial configurations * temperature-dependence * melting transitions * stability * systems * thermodynamics * localization * solvents * Synchrotron UV Resonance Raman * Molecular dynamics * Ionic liquids * Nucleic acids * Solvation
    OECD category: Microbiology
    Impact factor: 6.165, year: 2020
    Method of publishing: Limited access
    https://www.sciencedirect.com/science/article/pii/S0167732221030750?via%3Dihub
    Permanent Link: http://hdl.handle.net/11104/0331345
     
     
  3. 3.
    0555334 - BFÚ 2022 RIV CH eng J - Journal Article
    Krafčík, D. - Istvankova, E. - Dzatko, S. - Viskova, P. - Foldynová-Trantírková, Silvie - Trantírek, L.
    Towards Profiling of the G-Quadruplex Targeting Drugs in the Living Human Cells Using NMR Spectroscopy.
    International Journal of Molecular Sciences. Roč. 22, č. 11 (2021), č. článku 6042. E-ISSN 1422-0067
    R&D Projects: GA MŠk EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : structures in-vitro * human telomere * nucleic-acids * dna * rna * ligands
    OECD category: Biochemistry and molecular biology
    Impact factor: 5.923, year: 2020
    Method of publishing: Open access
    https://www.mdpi.com/1422-0067/22/11/6042
    Permanent Link: http://hdl.handle.net/11104/0329843
     
     
  4. 4.
    0554901 - BFÚ 2022 RIV GB eng J - Journal Article
    Malina, Jaroslav - Kostrhunová, Hana - Farrell, N. - Brabec, Viktor
    Antitumor substitution-inert polynuclear platinum complexes stabilize G-quadruplex DNA and suppress G-quadruplex-mediated gene expression.
    Inorganic Chemistry Frontiers. Roč. 8, č. 13 (2021), s. 3371-3381. ISSN 2052-1553. E-ISSN 2052-1553
    R&D Projects: GA ČR(CZ) GC20-14082J
    Institutional support: RVO:68081707
    Keywords : myc g-quadruplex * promoter region * phosphate clamp * metal-complexes * nucleic-acids
    OECD category: Organic chemistry
    Impact factor: 6.569, year: 2020
    Method of publishing: Limited access
    https://pubs.rsc.org/en/content/articlelanding/2021/QI/D1QI00488C
    Permanent Link: http://hdl.handle.net/11104/0329516
     
     
  5. 5.
    0554847 - BFÚ 2022 RIV DE eng J - Journal Article
    Kejnovská, Iva - Stadlbauer, Petr - Trantírek, L. - Renčiuk, Daniel - Gajarský, M. - Krafčík, D. - Palacký, Jan - Bednářová, Klára - Šponer, Jiří - Mergny, Jean-Louis - Vorlíčková, Michaela
    G-Quadruplex Formation by DNA Sequences Deficient in Guanines: Two Tetrad Parallel Quadruplexes Do Not Fold Intramolecularly.
    Chemistry - A European Journal. Roč. 27, č. 47 (2021), s. 12115-12125. ISSN 0947-6539. E-ISSN 1521-3765
    R&D Projects: GA ČR(CZ) GA19-17063S; GA ČR(CZ) GA20-20229S; GA ČR(CZ) GA21-23718S; GA MŠk EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : amber force-field * human telomere * molecular-dynamics * nucleic-acids * k+ solution * crystal-structure
    OECD category: Biochemistry and molecular biology
    Impact factor: 5.236, year: 2020
    Method of publishing: Limited access
    https://chemistry-europe.onlinelibrary.wiley.com/doi/10.1002/chem.202100895
    Permanent Link: http://hdl.handle.net/11104/0329475
     
     
  6. 6.
    0554454 - BFÚ 2022 RIV US eng J - Journal Article
    Zgarbová, M. - Šponer, Jiří - Jurečka, P.
    Z-DNA as a Touchstone for Additive Empirical Force Fields and a Refinement of the Alpha/Gamma DNA Torsions for AMBER.
    Journal of Chemical Theory and Computation. Roč. 17, č. 10 (2021), s. 6292-6301. ISSN 1549-9618. E-ISSN 1549-9626
    Institutional support: RVO:68081707
    Keywords : molecular-dynamics simulations * basis-set convergence * nucleic-acids * dihedral parameters * rna
    OECD category: Physical chemistry
    Impact factor: 6.006, year: 2020
    Method of publishing: Open access with time embargo
    https://pubs.acs.org/doi/10.1021/acs.jctc.1c00697
    Permanent Link: http://hdl.handle.net/11104/0329163
     
     
  7. 7.
    0554407 - BFÚ 2022 RIV CH eng J - Journal Article
    Hesko, Ondřej - Fojta, Miroslav - Špaček, Jan
    A simple electroanalysis of polyG RNA in mixtures with 3',5'-cyclic guanosine monophosphate achieved by selective desorption of the monomers from the electrode surface.
    Journal of Electroanalytical Chemistry. Roč. 901, NOV 15 2021 (2021), č. článku 115773. ISSN 1572-6657. E-ISSN 1873-2569
    R&D Projects: GA MŠk EF15_003/0000477; GA ČR(CZ) GA20-03187S
    Institutional support: RVO:68081707
    Keywords : electrochemical oxidation * nucleic-acids * oligonucleotides * dna * voltammetry
    OECD category: Electrochemistry (dry cells, batteries, fuel cells, corrosion metals, electrolysis)
    Impact factor: 4.464, year: 2020
    Method of publishing: Limited access
    https://www.sciencedirect.com/science/article/pii/S1572665721007992?via%3Dihub
    Permanent Link: http://hdl.handle.net/11104/0329105
     
     
  8. 8.
    0545118 - ÚOCHB 2022 RIV DE eng J - Journal Article
    Osifová, Zuzana - Socha, Ondřej - Mužíková Čechová, Lucie - Šála, Michal - Janeba, Zlatko - Dračínský, Martin
    Hydrogen-Bonding Interactions of Methylated Adenine Derivatives.
    European Journal of Organic Chemistry. Roč. 2021, č. 29 (2021), s. 4166-4173. ISSN 1434-193X. E-ISSN 1099-0690
    R&D Projects: GA ČR(CZ) GA20-01472S
    Institutional support: RVO:61388963
    Keywords : DFT calculations * Hoogsteen pairing * hydrogen bonds * NMR spectroscopy * nucleic acids
    OECD category: Physical chemistry
    Impact factor: 3.021, year: 2020
    Method of publishing: Limited access
    https://doi.org/10.1002/ejoc.202100721
    Permanent Link: http://hdl.handle.net/11104/0321875
     
     
  9. 9.
    0544245 - ÚVGZ 2022 RIV CH eng J - Journal Article
    Volna, A. - Bartas, M. - Karlický, Václav - Nezval, J. - Kundratova, K. - Pečinka, P. - Špunda, Vladimír - Červen, J.
    G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story.
    International Journal of Molecular Sciences. Roč. 22, č. 14 (2021), č. článku 7381. E-ISSN 1422-0067
    R&D Projects: GA ČR(CZ) GA18-23702S; GA MŠk(CZ) EF16_019/0000797
    Research Infrastructure: CzeCOS III - 90123
    Institutional support: RVO:86652079
    Keywords : dna-repair * transcription * visualization * instability * sequences * molecule * promoter * reveal * system * server * evolution * plant science * nucleic acids * circular dichroism * UV light
    OECD category: Biophysics
    Impact factor: 5.923, year: 2020
    Method of publishing: Open access
    https://www.mdpi.com/1422-0067/22/14/7381
    Permanent Link: http://hdl.handle.net/11104/0321276
     
     
  10. 10.
    0541893 - ÚOCHB 2022 RIV CH eng J - Journal Article
    Sgallová, Ráchel - Curtis, Edward A.
    Secondary Structure Libraries for Artificial Evolution Experiments.
    Molecules. Roč. 26, č. 6 (2021), č. článku 1671. E-ISSN 1420-3049
    R&D Projects: GA ČR(CZ) GA19-20989S; GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388963
    Keywords : SELEX * in vitro selection * aptamer * deoxyribozyme * ribozyme * artificial evolution * synthetic biology * DNA * RNA * nucleic acids * secondary structure
    OECD category: Biochemistry and molecular biology
    Impact factor: 4.411, year: 2020
    Method of publishing: Open access
    https://doi.org/10.3390/molecules26061671
    Permanent Link: http://hdl.handle.net/11104/0319388