Search results
- 1.0580396 - MBÚ 2024 RIV US eng M - Monography Chapter
Štursová, Martina - López-Mondejár, Rubén - Baldrian, Petr
Investigating the Bacterial and Fungal Communities Involved in Dead Biomass Degradation in Forest Soils.
Microbial Environmental Genomics (MEG). New York: Humana, 2023 - (Martin, F.; Uroz, S.), s. 157-168. Methods in Molecular Biology. ISBN 978-1-0716-2870-6
R&D Projects: GA ČR(CZ) GA20-14961S; GA ČR(CZ) GA22-30769S
Institutional support: RVO:61388971
Keywords : Stable isotope probing * Microbial communities * Soil ecology * Organic matter decomposition * Metagenomics * metatranscriptomics
OECD category: Microbiology
Permanent Link: https://hdl.handle.net/11104/0349169 - 2.0576258 - BC 2024 RIV US eng M - Monography Chapter
Jameson, E. - Taubert, M. - Angel, Roey - Coyotzi, S. - Chen, Y. - Eyice, Ö. - Schäfer, H. - Murrell, J.C. - Neufeld, J.D. - Dumont, M.G.
DNA-, RNA-, and protein-based stable-isotope probing for high-throughput biomarker analysis of active microorganisms.
Metagenomics: Methods and Protocols, Methods in Molecular Biology. New York: Humana, 2023 - (Streit, W.; Daniel, R.), Roč. 2555 (2023), s. 261-282. ISBN 978-1-0716-2794-5
Institutional support: RVO:60077344
Keywords : DNA * metagenomics * metatranscriptomics * protein * proteomics * RNA * Stable-isotope probing
OECD category: Microbiology
Permanent Link: https://hdl.handle.net/11104/0345837 - 3.0574464 - BC 2024 RIV GB eng J - Journal Article
Obiol, A. - Lopez-Escardo, D. - Salomaki, Eric David - Wisniewska, Monika Magdalena - Forn, I. - Sa, E. - Vaque, D. - Kolísko, Martin - Massana, R.
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory.
Microbiome. Roč. 11, č. 1 (2023), č. článku 134. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA MŠMT(CZ) EF20_079/0017809
Institutional support: RVO:60077344
Keywords : Bacterivory * Heterotrophic flagellates * Metatranscriptomics * Functional genes * Unamended incubations * Phagocytosis * Peptidases * Glycosidases
OECD category: Biochemistry and molecular biology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-023-01571-5
Permanent Link: https://hdl.handle.net/11104/0345915 - 4.0559317 - MBÚ 2023 RIV NL eng J - Journal Article
Hasby, F. A. - Barbi, Florian - Manzoni, S. - Lindahl, B. D.
Transcriptomic markers of fungal growth, respiration and carbon-use efficiency.
FEMS Microbiology Letters. Roč. 368, č. 15 (2021), č. článku fnab100. ISSN 0378-1097. E-ISSN 1574-6968
Institutional support: RVO:61388971
Keywords : growth * respiration * carbon-use efficiency * metatranscriptomics * gene markers * fungi
OECD category: Microbiology
Impact factor: 2.820, year: 2021
Method of publishing: Open access
https://academic.oup.com/femsle/article/368/15/fnab100/6335482?login=true
Permanent Link: https://hdl.handle.net/11104/0332644 - 5.0542515 - MBÚ 2022 RIV GB eng J - Journal Article
Kotabová, Eva - Malych, R. - Karlusich, J. J. P. - Kazamia, E. - Eichner, Meri - Mach, J. - Lesuisse, E. - Bowler, Ch. - Prášil, Ondřej - Suták, R.
Complex Response of the Chlorarachniophyte Bigelowiella natans to Iron Availability.
mSystems. Roč. 6, č. 1 (2021), č. článku e00738-20. ISSN 2379-5077. E-ISSN 2379-5077
R&D Projects: GA ČR(CZ) GA18-07822S; GA MŠMT(CZ) LQ1604
Institutional support: RVO:61388971
Keywords : Bigelowiella natans * iron * metagenomics * metatranscriptomics * photosynthesis * phytoplankton * proteomics
OECD category: Microbiology
Impact factor: 7.328, year: 2021
Method of publishing: Open access
https://msystems.asm.org/content/6/1/e00738-20.abstract
Permanent Link: http://hdl.handle.net/11104/0319911 - 6.0542363 - MBÚ 2022 RIV GB eng J - Journal Article
Tláskal, Vojtěch - Brabcová, Vendula - Větrovský, Tomáš - Jomura, M. - López-Mondejár, Rubén - Monteiro, L. M. O. - Saraiva, J. P. - Human, Zander Rainier - Cajthaml, Tomáš - da Rocha, U. N. - Baldrian, Petr
Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition.
mSystems. Roč. 6, č. 1 (2021), č. článku e01078-20. ISSN 2379-5077. E-ISSN 2379-5077
R&D Projects: GA ČR(CZ) GA17-20110S; GA MŠMT(CZ) LTT17022
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388971
Keywords : nitrogen-fixation * bacteria * deadwood * decomposition * forest ecosystems * fungi * metatranscriptomics * microbiome * nitrogen fixation * nutrient cycling
OECD category: Microbiology
Impact factor: 7.328, year: 2021
Method of publishing: Open access
https://msystems.asm.org/content/6/1/e01078-20.abstract
Permanent Link: http://hdl.handle.net/11104/0319790 - 7.0510382 - MBÚ 2020 RIV GB eng J - Journal Article
Lladó, Salvador - Větrovský, Tomáš - Baldrian, Petr
Tracking of the activity of individual bacteria in temperate forest soils shows guild-specific responses to seasonality.
Soil Biology and Biochemistry. Roč. 135, AUG (2019), s. 275-282. ISSN 0038-0717
R&D Projects: GA ČR(CZ) GP14-09040P; GA ČR(CZ) GA18-25706S; GA MŠMT(CZ) LTT17022
Institutional support: RVO:61388971
Keywords : Forest soil * Bacteria * Metatranscriptomics
OECD category: Microbiology
Impact factor: 5.795, year: 2019
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0038071719301440?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0300893File Download Size Commentary Version Access 141_Tracking of the activity of individual bacteria in temperate forest soils shows guild-specific responses to seasonality.pdf 4 1.5 MB Publisher’s postprint require - 8.0509912 - BC 2020 RIV GB eng J - Journal Article
Vavourakis, C. D. - Mehrshad, Maliheh - Balkema, C. - van Hall, R. - Andrei, Adrian-Stefan - Ghai, Rohit - Sorokin, D. Y. - Muyzer, G.
Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake.
BMC BIOLOGY. Roč. 17, č. 1 (2019), č. článku 69. E-ISSN 1741-7007
R&D Projects: GA ČR(CZ) GA17-04828S
Grant - others:AV ČR(CZ) L200961651; AV ČR(CZ) MSM200961801
Program: Program podpory perspektivních lidských zdrojů; Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:60077344
Keywords : Soda lake * Haloalkaliphiles * Metagenomics * Metatranscriptomics * Thiosulfate
OECD category: Microbiology
Impact factor: 6.765, year: 2019
Method of publishing: Open access
https://bmcbiol.biomedcentral.com/track/pdf/10.1186/s12915-019-0688-7
Permanent Link: http://hdl.handle.net/11104/0300506 - 9.0489043 - MBÚ 2019 RIV US eng J - Journal Article
Bukovská, Petra - Bonkowski, M. - Konvalinková, Tereza - Beskid, Olena - Hujslová, Martina - Püschel, David - Řezáčová, Veronika - Gutierrez-Nunez, M.S. - Gryndler, Milan - Jansa, Jan
Utilization of organic nitrogen by arbuscular mycorrhizal fungi-is there a specific role for protists and ammonia oxidizers?
Mycorrhiza. Roč. 28, č. 3 (2018), s. 269-283. ISSN 0940-6360. E-ISSN 1432-1890
R&D Projects: GA ČR(CZ) GA18-04892S; GA MŠMT(CZ) LK11224
Institutional support: RVO:61388971
Keywords : N-15-labeling * Metatranscriptomics * Organic nitrogen (N)
OECD category: Microbiology
Impact factor: 3.114, year: 2018
Permanent Link: http://hdl.handle.net/11104/0283531File Download Size Commentary Version Access Bukovská et al 2018.pdf 4 1.5 MB Author´s preprint require