Search results
- 1.0579428 - MBÚ 2024 RIV US eng J - Journal Article
Polák, Marek - Palasser, M. - Kádek, Alan - Kavan, Daniel - Wootton, C. A. - Delsuc, M. - Breuker, K. - Novák, Petr - van Agthoven, Maria Andrea
Top-Down Proteoform Analysis by 2D MS with Quadrupolar Detection.
Analytical Chemistry. Roč. 95, č. 44 (2023), s. 16123-16130. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA MŠMT(CZ) EF18_053/0017705; GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : 2-dimensional mass-spectrometry * electron-capture dissociation * chemical cross-linking * ultraviolet photodissociation * resolution * precursor
OECD category: Analytical chemistry
Impact factor: 7.4, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.analchem.3c02225
Permanent Link: https://hdl.handle.net/11104/0348240 - 2.0542407 - MBÚ 2022 RIV CZ eng L4 - Software
Kukačka, Zdeněk - Rosůlek, Michal - Jelínek, Jan - Slavata, Lukáš - Kavan, Daniel - Novák, Petr
LinX 2.0.
Internal code: 2.0 N14/N15 ; 2021
Technical parameters: softwarový nástroj v jazyce java
Economic parameters: Vylepšený nástroj pro vyhodnocení CXMS dat izotopově značených proteinů N14/N15
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : chemical cross-linking * mass spectrometry * proteins * structural proteomics
OECD category: Biochemistry and molecular biology
http://peterslab.org/downloads.php
Permanent Link: http://hdl.handle.net/11104/0319821 - 3.0542387 - MBÚ 2022 RIV US eng J - Journal Article
Kukačka, Zdeněk - Rosůlek, Michal - Jelínek, Jan - Slavata, Lukáš - Kavan, Daniel - Novák, Petr
LinX: A Software Tool for Uncommon Cross-Linking Chemistry.
Journal of Proteome Research. Roč. 20, č. 4 (2021), s. 2021-2027. ISSN 1535-3893. E-ISSN 1535-3907
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : mass spectrometry * high resolution * chemical cross-linking * proteins
OECD category: Biochemistry and molecular biology
Impact factor: 5.370, year: 2021
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00858
Permanent Link: http://hdl.handle.net/11104/0319810 - 4.0531921 - MBÚ 2021 RIV NL eng J - Journal Article
Fiala, Jan - Kukačka, Zdeněk - Novák, Petr
Influence of cross-linker polarity on selectivity towards lysine side chains.
Journal of Proteomics. Roč. 218, APR 30 (2020), č. článku 103716. ISSN 1874-3919. E-ISSN 1876-7737
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS; European Commission(XE) 731077 - EU_FT-ICR_MS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971
Keywords : Structural mass spectrometry * Protein structure * Chemical cross-linking
OECD category: Biochemistry and molecular biology
Impact factor: 4.044, year: 2020
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S1874391920300841
Permanent Link: http://hdl.handle.net/11104/0310557 - 5.0508013 - MBÚ 2020 RIV NL eng J - Journal Article
Hernychová, Lucie - Rosůlek, Michal - Kádek, Alan - Mareška, V. - Chmelík, Josef (ed.) - Adámková, Ljubina - Grobárová, Valeria - Šebesta, O. - Kukačka, Zdeněk - Skála, Kristián - Spiwok, V. - Černý, J. - Novák, Petr
The C-type lectin-like receptor Nkrp1b: Structural proteomics reveals features affecting protein conformation and interactions.
Journal of Proteomics. Roč. 196, MAR 30 (2019), s. 162-172. ISSN 1874-3919. E-ISSN 1876-7737
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) ED1.1.00/02.0109
Research Infrastructure: Czech-BioImaging - 90062
Institutional support: RVO:61388971
Keywords : Structural mass spectrometry * Chemical cross-linking * Ion mobility
OECD category: Microbiology
Impact factor: 3.509, year: 2019
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S187439191830397X?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0298974 - 6.0483490 - MBÚ 2018 RIV CZ eng L4 - Software
Jelínek, Jan - Rosůlek, Michal - Kukačka, Zdeněk - Kádek, Alan - Kavan, Daniel - Novák, Petr
LinX.
Internal code: MBU/ LinX ; 2017
Technical parameters: Program pracuje na principu Java skriptu
Economic parameters: Program na vyhodnocování hmotnostně spektrometrických dat
R&D Projects: GA MŠMT(CZ) LH15010; GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LD15089
Institutional support: RVO:61388971
Keywords : chemical cross-linking * mass spectrometry * structural proteomics
OECD category: Biochemistry and molecular biology
http://peterslab.org/downloads.php
Permanent Link: http://hdl.handle.net/11104/0278774 - 7.0455585 - MBÚ 2016 RIV US eng J - Journal Article
Kukačka, Zdeněk - Strohalm, Martin - Kavan, Daniel - Novák, Petr
Mapping protein structural changes by quantitative cross-linking.
Methods. Roč. 89, NOV 2015 (2015), s. 112-120. ISSN 1046-2023. E-ISSN 1095-9130
R&D Projects: GA MŠMT(CZ) EE2.3.20.0055; GA MŠMT(CZ) EE2.3.30.0003; GA MŠMT(CZ) ED1.1.00/02.0109
Grant - others:OPPC(XE) CZ.2.16/3.1.00/24023
Institutional support: RVO:61388971
Keywords : Chemical cross-linking * Proteolysis * Mass spectrometry
Subject RIV: CE - Biochemistry
Impact factor: 3.503, year: 2015
Permanent Link: http://hdl.handle.net/11104/0256211File Download Size Commentary Version Access Kukačka_2015_Methods.pdf 5 1.4 MB Publisher’s postprint require - 8.0420972 - MBÚ 2014 RIV US eng J - Journal Article
Rozbeský, Daniel - Sovová, Žofie - Marcoux, J. - Man, Petr - Ettrich, Rüdiger - Robinson, C. V. - Novák, Petr
Structural Model of Lymphocyte Receptor NKR-P1C Revealed by Mass Spectrometry and Molecular Modeling.
Analytical Chemistry. Roč. 85, č. 3 (2013), s. 1597-1604. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GAP207/10/1040; GA ČR GAP207/10/1934; GA ČR GA303/09/0477
Institutional research plan: CEZ:AV0Z60870520
Institutional support: RVO:61388971
Keywords : CHEMICAL CROSS-LINKING * NATURAL-KILLER-CELL * ION MOBILITY
Subject RIV: CB - Analytical Chemistry, Separation
Impact factor: 5.825, year: 2013
Permanent Link: http://hdl.handle.net/11104/0227583 - 9.0389121 - MBÚ 2013 RIV US eng J - Journal Article
Rozbeský, Daniel - Man, Petr - Kavan, Daniel - Chmelík, Josef - Černý, Jiří - Bezouška, Karel - Novák, Petr
Chemical Cross-Linking and H/D Exchange for Fast Refinement of Protein Crystal Structure.
Analytical Chemistry. Roč. 84, č. 2 (2012), s. 867-870. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GAP207/10/1040; GA ČR GA303/09/0477; GA ČR GD305/09/H008; GA MŠMT LC545
Institutional research plan: CEZ:AV0Z50520701; CEZ:AV0Z50200510
Keywords : MASS-SPECTROMETRY * chemical cross-linking * NKR-P1A receptor
Subject RIV: EE - Microbiology, Virology
Impact factor: 5.695, year: 2012
Permanent Link: http://hdl.handle.net/11104/0218019 - 10.0388476 - MBÚ 2013 RIV US eng J - Journal Article
Haladová, Kateřina - Mrázek, Hynek - Ječmen, Tomáš - Halada, Petr - Man, Petr - Novák, Petr - Chmelík, Josef - Obšil, Tomáš - Šulc, Miroslav
The combination of hydrogen/deuterium exchange or chemical cross-linking techniques with mass spectrometry: Mapping of human 14-3-3 zeta homodimer interface.
Journal of Structural Biology. Roč. 179, č. 1 (2012), s. 10-17. ISSN 1047-8477. E-ISSN 1095-8657
R&D Projects: GA ČR GAP207/12/0627; GA ČR GD305/09/H008
Institutional support: RVO:61388971 ; RVO:67985823
Keywords : Protein-protein interaction * 14-3-3 Homodimer * Chemical cross-linking
Subject RIV: CE - Biochemistry
Impact factor: 3.361, year: 2012
Permanent Link: http://hdl.handle.net/11104/0217376