Search results
- 1.0576721 - MBÚ 2025 GB eng J - Journal Article
Hakimzadeh, A. - Abdala Asbun, A. - Albanese, D. - Bernard, M. - Buchner, D. - Callahan, B. - Caporaso, J. G. - Curd, E. - Djemiel, C. - Brandstrom Durling, M. - Elbrecht, V. - Gold, Z. - Gweon, H. S. - Hajibabaei, M. - Hildebrand, F. - Mikryukov, V. - Normandeau, E. - Ozkurt, E. - M. Palmer, J. - Pascal, G. - Porter, T. M. - Straub, D. - Vasar, M. - Větrovský, Tomáš - Zafeiropoulos, H. - Anslan, S.
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Molecular Ecology Resources. (2023). ISSN 1755-098X. E-ISSN 1755-0998
R&D Projects: GA ČR(CZ) GA21-17749S
Institutional support: RVO:61388971
Keywords : amplicon data analysis * bioinformatics * environmental DNA * metabarcoding * pipeline * review
OECD category: Microbiology
Impact factor: 7.7, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1111/1755-0998.13847
Permanent Link: https://hdl.handle.net/11104/0346151 - 2.0575856 - ÚEB 2024 RIV GB eng J - Journal Article
Timofeyenko, Ksenia - Kanavalau, D. - Alexiou, P. - Kalyna, M. - Růžička, Kamil
Catsnap: a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing.
New Phytologist. Roč. 238, č. 4 (2023), s. 1722-1732. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA ČR(CZ) GA23-08067S; GA MŠMT(CZ) EF16_019/0000738
Institutional support: RVO:61389030
Keywords : alternative splicing * bioinformatics * determinism * isoforms * machine learning * molecular evolution * transcriptome
OECD category: Environmental biotechnology
Impact factor: 9.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/nph.18799
Permanent Link: https://hdl.handle.net/11104/0345561File Download Size Commentary Version Access 2023_Timofeyenko_New Phytologist_1722___@@@.pdf 1 887.1 KB Other open-access - 3.0575020 - ÚMG 2024 RIV CH eng J - Journal Article
Krayem, Imtissal - Sohrabi, Yahya - Havelková, Helena - Gusareva, Elena - Strnad, Hynek - Čepičková, Marie - Volková, Valeriya - Kurey, Irina - Vojtíšková, Jarmila - Svobodová, M. - Demant, P. - Lipoldová, Marie
Functionally distinct regions of the locus Leishmania major response 15 control IgE or IFN & gamma, level in addition to skin lesions.
Frontiers in Immunology. Roč. 14, Aug (2023), č. článku 1145269. ISSN 1664-3224. E-ISSN 1664-3224
R&D Projects: GA ČR GA16-22346S; GA MZd NV19-05-00457
Institutional support: RVO:68378050
Keywords : Leishmania major * susceptibility to infection * quantitative trait locus * advanced intercross line * recombinant mapping * bioinformatics analysis * fine mapping * functional heterogeneity
OECD category: Biochemistry and molecular biology
Impact factor: 7.3, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fimmu.2023.1145269/full
Permanent Link: https://hdl.handle.net/11104/0346209 - 4.0573111 - ÚŽFG 2024 RIV GB eng J - Journal Article
Křivánek, J. - Buchtová, Marcela - Fried, K. - Adameyko, I.
Plasticity of Dental Cell Types in Development, Regeneration, and Evolution.
Journal of Dental Research. Roč. 102, č. 6 (2023), s. 589-598. ISSN 0022-0345. E-ISSN 1544-0591
Institutional support: RVO:67985904
Keywords : tooth development * stem cell(s) * developmental biology * dental informatics * bioinformatics * single-cell RNA-seq * cell differentiation
OECD category: Developmental biology
Impact factor: 7.6, year: 2022
Method of publishing: Open access
https://journals.sagepub.com/doi/10.1177/00220345231154800
Permanent Link: https://hdl.handle.net/11104/0343692 - 5.0571760 - ÚMG 2024 RIV US eng J - Journal Article
Menezes, P. R. - Madureira Trufen, Carlos Eduardo - Lichtenstein, F. - Pellegrina, D. V. d. S. - Reis, E. M. - Onuki, J.
Transcriptome profile analysis reveals putative molecular mechanisms of 5-aminolevulinic acid toxicity.
Archives of Biochemistry and Biophysics. Roč. 738, April (2023), č. článku 109540. ISSN 0003-9861. E-ISSN 1096-0384
Institutional support: RVO:68378050
Keywords : 5-aminolevulinic acid * Bioinformatics * Hepatocellular carcinoma * Porphyrias * Transcriptome
OECD category: Biochemistry and molecular biology
Impact factor: 3.9, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0003986123000395?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0343502 - 6.0563322 - ÚEB 2023 RIV US eng J - Journal Article
Batcho, Agossa Anicet - Nwogwugwu, J. O. - Ali, M. - Jabbar, B. - Javaid, A. - Fellner, Martin
Identification and characterisation of blue light photoreceptor gene family and their expression in tomato (Solanum lycopersicum) under cold stress.
Functional Plant Biology. Roč. 49, č. 7 (2022), s. 647-658. ISSN 1445-4408. E-ISSN 1445-4416
Institutional support: RVO:61389030
Keywords : abiotic stress tolerance * bioinformatics * blue light signaling * expression analysis * photoreceptor genes * photosynthesis * tomato * transcriptome data
OECD category: Plant sciences, botany
Impact factor: 3, year: 2022
Method of publishing: Open access
https://doi.org/10.1071/FP21297
Permanent Link: https://hdl.handle.net/11104/0335311File Download Size Commentary Version Access 2022_Batcho_FUNCTIONAL PLANT BIOLOGY_647.pdf 8 1.4 MB Other open-access - 7.0555595 - ÚMG 2022 RIV GB eng J - Journal Article
Thind, A.S. - Monga, I. - Thakur, Prasoon-Kumar - Kumari, P. - Dindhoria, K. - Krzak, M. - Ranson, M. - Ashford, B.
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology.
Briefings in Bioinformatics. Roč. 22, č. 6 (2021), č. článku bbab259. ISSN 1467-5463. E-ISSN 1477-4054
R&D Projects: GA ČR GA20-04099S
Institutional support: RVO:68378050
Keywords : next-generation sequencing * RNA-Seq applications * RNA-Seq genomics * bioinformatics
OECD category: Biochemistry and molecular biology
Impact factor: 13.994, year: 2021
Method of publishing: Limited access
https://academic.oup.com/bib/article-abstract/22/6/bbab259/6330938?redirectedFrom=fulltext&login=false
Permanent Link: http://hdl.handle.net/11104/0330062 - 8.0553872 - ÚOCHB 2022 RIV eng U - Conference, Workshop Arrangement
Vondrášek, Jiří
ELIXIR CZ Annual Conference 2021.
[Praha, 25.11.2021-26.11.2021, (K-EUR 80/1)]
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388963
Keywords : ELIXIR CZ * Czech national infrastructure for biological data * bioinformatics
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
https://www.elixir-czech.cz/events/elixir-cz-annual-conference-nov-2021
Permanent Link: http://hdl.handle.net/11104/0328553 - 9.0549009 - ÚTIA 2022 RIV US eng C - Conference Paper (international conference)
Murray, S. E. - Quinn, Anthony
Bayesian Selective Transfer Learning for Patient-Specific Inference in Thyroid Radiotherapy.
Proceedings of the 32nd Irish Signals and Systems Conference (ISSC) 2021. Piscataway: IEEE, 2021, č. článku 9467862. ISBN 978-1-6654-3429-4.
[Irish Signals and Systems Conference (ISSC 2021) /23./. Athlone (IE), 10.06.2021-11.06.2021]
R&D Projects: GA ČR(CZ) GA18-15970S
Institutional support: RVO:67985556
Keywords : Bioinformatics * Decision support systems * Nuclear medicine * Bayesian Transfer learning
OECD category: Applied mathematics
http://library.utia.cas.cz/separaty/2021/AS/quinn-0549009.pdf
Permanent Link: http://hdl.handle.net/11104/0325123 - 10.0546407 - BFÚ 2022 RIV FR eng J - Journal Article
Bohalova, Natalia - Mergny, Jean-Louis - Brázda, Václav
Novel G-quadruplex prone sequences emerge in the complete assembly of the human X chromosome.
Biochimie. Roč. 191, DEC 2021 (2021), s. 87-90. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : G-quadruplex * Chromosome X * G4Hunter * Bioinformatics * Non-B DNA
OECD category: Biochemistry and molecular biology
Impact factor: 4.372, year: 2021
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0300908421002078?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0322927