Search results
- 1.0540782 - BTÚ 2021 RIV GB eng J - Journal Article
Kolenko, Petr - Svoboda, Jakub - Černý, Jiří - Charnavets, Tatsiana - Schneider, Bohdan
Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallographica Section D-Structural Biology. Roč. 76, DEC 1 2020 (2020), s. 1233-1243. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : DNA structure * noncanonical base pairs * T– * T mismatch
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798320014151
Permanent Link: http://hdl.handle.net/11104/0318385 - 2.0518313 - BFÚ 2020 RIV CH eng J - Journal Article
Hrabina, Ondřej - Brabec, Viktor - Nováková, Olga
Translesion DNA Synthesis Across Lesions Induced by Oxidative Products of Pyrimidines: An Insight into the Mechanism by Microscale Thermophoresis.
International Journal of Molecular Sciences. Roč. 20, č. 20 (2019), č. článku 5012. E-ISSN 1422-0067
R&D Projects: GA ČR GA17-09436S
Institutional support: RVO:68081707
Keywords : i klenow fragment * polymerase-i * cross-links * abasic site * base-pairs
OECD category: Biochemistry and molecular biology
Impact factor: 4.556, year: 2019
Method of publishing: Open access
https://www.mdpi.com/1422-0067/20/20/5012/pdf
Permanent Link: http://hdl.handle.net/11104/0303475 - 3.0509161 - ÚOCHB 2020 ES eng A - Abstract
Šebera, Jakub - Sychrovský, Vladimír - Fukal, Jiří
Theoretical study of charge transport in the metal-mediated base pairs: T-Hg(II)-T, T-2Ag(I)-T and Ts-2Ag(I)-Ts.
18th International Conference on Density-Functional Theory and its Applications. Alicante: University of Alicante, 2019. s. 175.
[International Conference on Density-Functional Theory and its Applications /18./. 22.07.2019-26.07.2019, Alicante]
R&D Projects: GA ČR(CZ) GA18-14990S
Institutional support: RVO:61388963
Keywords : DFT/NEGF method * metallo-base-pairs * single-molecule conductance
OECD category: Physical chemistry
Permanent Link: http://hdl.handle.net/11104/0302451 - 4.0502364 - FZÚ 2019 RIV GB eng J - Journal Article
Tanaka, Y. - Kondo, J. - Sychrovský, V. - Šebera, Jakub - Dairaku, T. - Saneyoshi, H. - Urata, H. - Torigoe, H. - Ono, A.
Structures, physicochemical properties and applications of T-HgII-T, C-AgI-C and other metallo-base-pairs.
Chemical Communications. Roč. 51, č. 98 (2015), s. 17343-17360. ISSN 1359-7345. E-ISSN 1364-548X
Institutional support: RVO:68378271
Keywords : ion-biomolecule interactions * metallo-base-pairs * C–AgI–C * T–HgII–T
OECD category: Biophysics
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0294307 - 5.0495518 - BFÚ 2019 RIV GB eng J - Journal Article
Krepl, Miroslav - Voegele, J. - Kruse, Holger - Duchardt-Ferner, E. - Woehnert, J. - Šponer, Jiří
An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitch.
Nucleic Acids Research. Roč. 46, č. 13 (2018), s. 6528-6543. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : trna(asp) anticodon hairpin * amber force-field * stem-loop-v * molecular-dynamics * watson-crick * transfer-rna * nucleic-acids * active-site * base-pairs * rapid identification
OECD category: Biochemistry and molecular biology
Impact factor: 11.147, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288484 - 6.0495173 - BFÚ 2019 RIV US eng J - Journal Article
Kruse, Holger - Šponer, Jiří
Highly accurate equilibrium structure of the C2h symmetric N1-to-O2 hydrogen-bonded uracil-dimer.
International Journal of Quantum Chemistry. Roč. 118, č. 15 (2018), č. článku e25624. ISSN 0020-7608. E-ISSN 1097-461X
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA16-13721S
Institutional support: RVO:68081707
Keywords : density-functional theory * dispersion correction * noncovalent interactions * base-pairs * basis-sets * gas-phase * geometries * molecules * thermochemistry * formamide
OECD category: Physical chemistry
Impact factor: 2.263, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288181 - 7.0488384 - BFÚ 2018 RIV DE eng J - Journal Article
Dzatko, S. - Krafčíková, M. - Haensel-Hertsch, R. - Fessl, T. - Fiala, R. - Loja, T. - Krafčík, D. - Mergny, Jean-Louis - Foldynová-Trantírková, Silvie - Trantírek, L.
Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells.
Angewandte Chemie - International Edition. Roč. 57, č. 8 (2018), s. 2165-2169. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : g-quadruplex * telomeric dna * base-pairs * molecular switch
OECD category: Electrochemistry (dry cells, batteries, fuel cells, corrosion metals, electrolysis)
Impact factor: 12.257, year: 2018
Permanent Link: http://hdl.handle.net/11104/0282970 - 8.0471959 - BFÚ 2017 RIV US eng J - Journal Article
Kührová, P. - Best, R.B. - Bottaro, S. - Bussi, G. - Šponer, Jiří - Otyepka, Michal - Banáš, Pavel
Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies.
Journal of Chemical Theory and Computation. Roč. 12, č. 9 (2016), s. 4534-4548. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA ČR GAP208/12/1878
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * base-pairs * tertiary interactions * explicit-solvent
Subject RIV: BO - Biophysics
Impact factor: 5.245, year: 2016
Permanent Link: http://hdl.handle.net/11104/0269320 - 9.0466107 - ÚOCHB 2017 RIV NL eng J - Journal Article
Šebera, Jakub - Tanaka, Y. - Ono, A. - Sychrovský, Vladimír
The effect of chemical modification of DNA base on binding of Hg-II and Ag-I in metal-mediated base pairs.
Inorganica chimica acta. Roč. 452, Oct 1 (2016), s. 199-204. ISSN 0020-1693. E-ISSN 1873-3255
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963
Keywords : DFT * metal-mediated base pairs * Hg * Ag
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264505 - 10.0454129 - ÚOCHB 2016 RIV GB eng J - Journal Article
Tanaka, Y. - Kondo, J. - Sychrovský, Vladimír - Šebera, Jakub - Dairaku, T. - Saneyoshi, H. - Urata, H. - Torigoe, H. - Ono, A.
Structures, physicochemical properties, and applications of T-Hg-II-T, C-Ag-I-C, and other metallo-base-pairs.
Chemical Communications. Roč. 51, č. 98 (2015), s. 17343-17360. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : metal-mediated base-pairs * T–Hg–T * C–Ag–C
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0254830