Search results
- 1.0574517 - BFÚ 2024 RIV US eng J - Journal Article
Voegele, J. - Duchardt-Ferner, E. - Kruse, Holger - Zhang, Zhengyue - Šponer, Jiří - Krepl, Miroslav - Woehnert, J.
Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNA.
RNA. Roč. 29, č. 6 (2023), s. 790-807. ISSN 1355-8382. E-ISSN 1469-9001
R&D Projects: GA ČR(CZ) GA23-05639S
Institutional support: RVO:68081707
Keywords : pseudouridine * RNA structure * U-turn * U base pair * nmr * MD simulations
OECD category: Biochemistry and molecular biology
Impact factor: 4.5, year: 2022
Method of publishing: Limited access
https://rnajournal.cshlp.org/content/29/6/790
Permanent Link: https://hdl.handle.net/11104/0350076 - 2.0541887 - BFÚ 2022 RIV US eng J - Journal Article
Zhang, Z. - Vogele, J. - Mráziková, Klaudia - Kruse, Holger - Cang, X. - Woehnert, J. - Krepl, Miroslav - Šponer, Jiří
Phosphorothioate Substitutions in RNA Structure Studied by Molecular Dynamics Simulations, QM/MM Calculations, and NMR Experiments.
Journal of Physical Chemistry B. Roč. 125, č. 3 (2021), s. 825-840. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR(CZ) GA20-16554S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : RNA Structure * Molecular Dynamics Simulations * QM/MM Calculations * NMR Experiments
OECD category: Physical chemistry
Impact factor: 3.466, year: 2021
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.jpcb.0c10192
Permanent Link: http://hdl.handle.net/11104/0319383 - 3.0511789 - BFÚ 2020 RIV GB eng J - Journal Article
Suddala, K.C. - Price, I.R. - Dandpat, S.S. - Janeček, Michal - Kührová, P. - Šponer, Jiří - Banáš, Pavel - Ke, A. - Walter, N.G.
Local-to-global signal transduction at the core of a Mn2+ sensing riboswitch.
Nature Communications. Roč. 10, SEP 20 2019 (2019), č. článku 4304. E-ISSN 2041-1723
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : molecular-dynamics * eubacteria sense * rna structure * single
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 12.121, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41467-019-12230-5.pdf
Permanent Link: http://hdl.handle.net/11104/0302037 - 4.0373421 - BFÚ 2012 RIV US eng J - Journal Article
Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046
Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006883 - 5.0347709 - BFÚ 2011 RIV US eng J - Journal Article
Banáš, P. - Walter, N.G. - Šponer, Jiří - Otyepka, M.
Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.
Journal of Physical Chemistry B. Roč. 114, č. 26 (2010), s. 8701-8712. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA MŠMT(CZ) LC06030; GA ČR(CZ) GA203/09/1476; GA MŠMT(CZ) GD203/09/H046; GA AV ČR(CZ) IAA400040802; GA AV ČR(CZ) 1QS500040581
Grant - others:GA MŠk(CZ) LC512
Program: LC
Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
Keywords : riboswitch * ribozyme * RNA structure * molecular dynamics simulations
Subject RIV: BO - Biophysics
Impact factor: 3.603, year: 2010
Permanent Link: http://hdl.handle.net/11104/0006029