Search results
- 1.0541594 - MBÚ 2022 RIV CH eng J - Journal Article
Vohradský, Jiří - Schwarz, Marek - Ramaniuk, Olga - Ruiz-Larrabeiti, Olatz - Vaňková Hausnerová, Viola - Šanderová, Hana - Krásný, Libor
Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth.
Microorganisms. Roč. 9, č. 1 (2021). E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_013/0001777; GA ČR(CZ) GA20-12109S
Institutional support: RVO:61388971
Keywords : Bacillus subtilis * SigB * gene regulatory networks * computational modeling * promoter sequence analysis
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 4.926, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2076-2607/9/1/112
Permanent Link: http://hdl.handle.net/11104/0319132 - 2.0538143 - ÚMG 2021 RIV US eng J - Journal Article
Desideri, F. - Cipriano, A. - Petrezselyova, Silvia - Buonaiuto, G. - Santini, T. - Kašpárek, Petr - Procházka, Jan - Janson, G. - Paiardini, A. - Calicchio, A. - Colantoni, A. - Sedláček, Radislav - Bozzoni, I. - Ballarino, M.
Intronic Determinants Coordinate Charme lncRNA Nuclear Activity through the Interaction with MATR3 and PTBP1.
Cell Reports. Roč. 33, č. 12 (2020), č. článku 108548. ISSN 2211-1247. E-ISSN 2211-1247
R&D Projects: GA MŠMT(CZ) LM2015040; GA MŠMT(CZ) LM2018126; GA MŠMT ED2.1.00/19.0395; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT EF16_013/0001789
Institutional support: RVO:68378050
Keywords : tract binding-protein * noncoding rna * gene-expression * regulatory networks * splicing repressor * phase-separation * distal myopathy * x-chromosome * localization * sequences
OECD category: Developmental biology
Impact factor: 9.423, year: 2020
Method of publishing: Open access
https://www.cell.com/cell-reports/fulltext/S2211-1247(20)31537-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS2211124720315370%3Fshowall%3Dtrue
Permanent Link: http://hdl.handle.net/11104/0315964 - 3.0486275 - ÚMG 2018 RIV US eng J - Journal Article
Franke, V. - Ganesh, Sravya - Karlic, R. - Malík, Radek - Pasulka, Josef - Horvat, F. - Kuzman, M. - Fulka, Helena - Černohorská, Markéta - Urbanová, Jana - Svobodová, Eliška - Ma, J. - Suzuki, Y. - Aoki, F. - Schultz, R. M. - Vlahovicek, K. - Svoboda, Petr
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes.
Genome Research. Roč. 27, č. 8 (2017), s. 1384-1394. ISSN 1088-9051. E-ISSN 1549-5469
R&D Projects: GA MŠMT LO1419
EU Projects: European Commission(XE) 647403 - D-FENS
Grant - others:GA MŠk(CZ) LM2015042; GA MŠk,CERIT-SC(CZ) LM2015085
Institutional support: RVO:68378050
Keywords : murine endogenous retrovirus * antarctic notothenioid fish * embryonic stem-cells * transposable elements * mouse oocytes * muerv-l * preimplantation embryos * methylation landscape * regulatory networks * dna methylation
OECD category: Reproductive biology (medical aspects to be 3)
Impact factor: 10.101, year: 2017
Permanent Link: http://hdl.handle.net/11104/0281145File Download Size Commentary Version Access Genome_Research_V_Franke_2017.pdf 0 633.2 KB Publisher’s postprint require - 4.0444817 - MÚ 2016 RIV GB eng J - Journal Article
Liao, S. - Vejchodský, Tomáš - Erban, R.
Tensor methods for parameter estimation and bifurcation analysis of stochastic reaction networks.
Journal of the Royal Society Interface. Roč. 12, č. 108 (2015), s. 20150233. ISSN 1742-5689. E-ISSN 1742-5662
EU Projects: European Commission(XE) 328008 - STOCHDETBIOMODEL
Institutional support: RVO:67985840
Keywords : gene regulatory networks * stochastic modelling * parametric analysis
Subject RIV: BA - General Mathematics
Impact factor: 3.818, year: 2015
http://rsif.royalsocietypublishing.org/content/12/108/20150233
Permanent Link: http://hdl.handle.net/11104/0247287File Download Size Commentary Version Access Vejchodsky1.pdf 2 1.1 MB Publisher’s postprint require - 5.0440828 - MÚ 2015 RIV CZ eng J - Journal Article
Vejchodský, Tomáš
Accurate reduction of a model of circadian rhythms by delayed quasi steady state assumptions.
Mathematica Bohemica. Roč. 139, č. 4 (2014), s. 577-585. ISSN 0862-7959
Grant - others:European Commission(XE) StochDetBioModel(328008)
Program: FP7-PEOPLE
Institutional support: RVO:67985840
Keywords : biochemical networks * gene regulatory networks * oscillating systems * periodic solution
Subject RIV: BA - General Mathematics
http://hdl.handle.net/10338.dmlcz/144135
Permanent Link: http://hdl.handle.net/11104/0243931File Download Size Commentary Version Access Vejchodsky3.pdf 1 183.3 KB Publisher’s postprint open-access - 6.0428384 - ÚTIA 2015 AT eng A - Abstract
Hlaváčková-Schindler, Kateřina
Granger Causality for ill-posed Problems: Methods, Ideas, and Application in Life Sciences.
ABSTRACTS of Conference on Statistics and Causality. Viena: University of Vienna, 2014. s. 6-6.
[Conference of Statistics and Causality. 23.5.2014-24.5.2014, Vienna]
Institutional support: RVO:67985556
Keywords : causality * gene regulatory networks
Subject RIV: BB - Applied Statistics, Operational Research
http://library.utia.cas.cz/separaty/2014/AS/hlavackova-schindler-0428384.pdf
Permanent Link: http://hdl.handle.net/11104/0233819File Download Size Commentary Version Access 0428384.pdf 0 100.9 KB Other open-access - 7.0382217 - ÚEB 2013 RIV US eng J - Journal Article
Le, D. T. - Nishiyama, R. - Watanabe, Y. - Vaňková, Radomíra - Tanaka, M. - Seki, M. - Ham, L. H. - Yamaguchi-Shinozaki, K. - Shinozaki, K. - Tran, L. S. P.
Identification and Expression Analysis of Cytokinin Metabolic Genes in Soybean under Normal and Drought Conditions in Relation to Cytokinin Levels.
PLoS ONE. Roč. 7, č. 8 (2012), „e42411″. ISSN 1932-6203. E-ISSN 1932-6203
Institutional research plan: CEZ:AV0Z50380511
Keywords : ZEATIN-TYPE CYTOKININS * TRANSCRIPTIONAL REGULATORY NETWORKS * TRANSGENIC TOBACCO PLANTS
Subject RIV: EB - Genetics ; Molecular Biology
Impact factor: 3.730, year: 2012
Permanent Link: http://hdl.handle.net/11104/0212505File Download Size Commentary Version Access 2012_Le_PLOS ONE_e42411.pdf 0 1.6 MB Other open-access - 8.0367428 - MBÚ 2012 RIV US eng J - Journal Article
Vohradská, E. - Vohradský, Jiří
Virtual Mutagenesis of the Yeast Cyclins Genetic Network Reveals Complex Dynamics of Transcriptional Control Networks.
PLoS ONE. Roč. 6, č. 4 (2011), s. 1-9. ISSN 1932-6203. E-ISSN 1932-6203
R&D Projects: GA ČR GA310/07/1009; GA ČR GAP302/11/0229
Institutional research plan: CEZ:AV0Z50200510
Keywords : REGULATORY NETWORKS * SACCHAROMYCES-CEREVISIAE * CELL-CYCLE
Subject RIV: EE - Microbiology, Virology
Impact factor: 4.092, year: 2011
Permanent Link: http://hdl.handle.net/11104/0202124 - 9.0313104 - MBÚ 2009 RIV GB eng J - Journal Article
To, Cuong - Vohradský, Jiří
Supervised inference of gene-regulatory networks.
[Kontrolovaná předpověď genových regulačních sítí.]
BMC Bioinformatics. Roč. 9, č. 2 (2008), s. 1-14. ISSN 1471-2105. E-ISSN 1471-2105
R&D Projects: GA ČR GA310/04/0804; GA ČR GA310/07/1009
Grant - others:XE(XE) EC Integrated Project ActinoGEN, LSHM-CT-2004-005224
Institutional research plan: CEZ:AV0Z50200510
Keywords : gene-regulatory networks * gene expression * computational biology
Subject RIV: IN - Informatics, Computer Science
Impact factor: 3.781, year: 2008
Permanent Link: http://hdl.handle.net/11104/0164017 - 10.0099699 - MBÚ 2008 RIV GR eng C - Conference Paper (international conference)
Vu, Thi Tra - Vohradský, Jiří
Inference of cooperative control of cell cycle related genes in yeast using modeling of transcriptional control.
[Odvození kooperativity v regulaci genů spojených s buněčným cyklem kvasnic s použitím modelování regulace transkripce.]
International Conference on Pathways, Networks, and Systems /5./. Greece: Porto Heli Conference Center, 2007, s. 60-60.
[International Conference on Pathways, Networks, and Systems /5./. Porto Heli (GR), 24.06.2007-29.06.2007]
R&D Projects: GA ČR GA310/07/1009; GA ČR GA310/04/0804
Grant - others:XE(XE) Integrated Project ActinoGEN - LSHM-CT-2004-005224
Institutional research plan: CEZ:AV0Z50200510
Keywords : transcriptional regulatory networks
Subject RIV: EC - Immunology
Permanent Link: http://hdl.handle.net/11104/0158236