Search results
- 1.0585960 - ÚOCHB 2025 RIV AT eng C - Conference Paper (international conference)
Bushuiev, A. - Bushuiev, Roman - Sedlář, J. - Pluskal, Tomáš - Damborský, J. - Mazurenko, S. - Šivic, J.
Revealing data leakage in protein interaction benchmarks.
GEM-2024. ICLR 2024 Workshop on Generative and Experimental Perspectives for Biomolecular Design. Vienna: ICLR, 2024.
[ICLR 2024. International Conference on Learning Representations /12./. Vienna (AT), 07.05.2024-11.05.2024]
R&D Projects: GA MŠMT(CZ) LM2023055; GA ČR(CZ) GM21-11563M
EU Projects: European Commission(XE) 891397 - KavaTarget
Research Infrastructure: e-INFRA CZ II - 90254; RECETOX RI II - 90269
Institutional support: RVO:61388963
Keywords : protein-protein interactions * data leakage * benchmarks * data splits
OECD category: Other biological topics
https://openreview.net/forum?id=ORMXYUK5IY
Permanent Link: https://hdl.handle.net/11104/0353594File Download Size Commentary Version Access 0585960.pdf 0 1.7 MB Publisher’s postprint open-access - 2.0585931 - ÚOCHB 2025 RIV AT eng C - Conference Paper (international conference)
Kirjner, A. - Yim, J. - Samusevich, Raman - Bracha, S. - Jaakkola, T. - Barzilay, R. - Fiete, I.
Improving protein optimization with smoothed fitness landscapes.
ICLR 2024. The Twelfth International Conference on Learning Representations. Vienna: ICLR, 2024.
[ICLR 2024. International Conference on Learning Representations /12./. Vienna (AT), 07.05.2024-11.05.2024]
Research Infrastructure: e-INFRA CZ II - 90254
Institutional support: RVO:61388963
Keywords : protein design * discrete optimization * protein engineering * markov chain monte carlo * graph signal processing
OECD category: Other biological topics
https://openreview.net/forum?id=rxlF2Zv8x0
Permanent Link: https://hdl.handle.net/11104/0353566File Download Size Commentary Version Access 0585931.pdf 0 1.5 MB Publisher’s postprint open-access - 3.0585897 - ÚOCHB 2025 RIV AT eng C - Conference Paper (international conference)
Bushuiev, A. - Bushuiev, Roman - Kouba, P. - Filkin, A. - Gabrielová, M. - Gabriel, M. - Sedlář, J. - Pluskal, Tomáš - Damborský, J. - Mazurenko, S. - Šivic, J.
Learning to design protein-protein interactions with enhanced generalization.
ICLR 2024. The Twelfth International Conference on Learning Representations. Vienna: ICLR, 2024.
[ICLR 2024. International Conference on Learning Representations /12./. Vienna (AT), 07.05.2024-11.05.2024]
R&D Projects: GA MŠMT(CZ) LM2023055; GA ČR(CZ) GM21-11563M
EU Projects: European Commission(XE) 891397 - KavaTarget
Research Infrastructure: e-INFRA CZ II - 90254; RECETOX RI II - 90269
Institutional support: RVO:61388963
Keywords : protein-protein interactions * protein design * generalization * self-supervised learning * equivariant 3D representations
OECD category: Other biological topics
https://openreview.net/forum?id=xcMmebCT7s
Permanent Link: https://hdl.handle.net/11104/0353542File Download Size Commentary Version Access 0585897.pdf 0 9.5 MB Publisher’s postprint open-access - 4.0585740 - ÚOCHB 2025 RIV US eng J - Journal Article
Sülzen, Hagen - Volkov, A. N. - Geens, R. - Zahedifard, F. - Stijlemans, B. - Zoltner, M. - Magez, S. - Sterckx, Y. G.-J. - Zoll, Sebastian
Beyond the VSG Layer: Exploring the Role of Intrinsic Disorder in the Invariant Surface Glycoproteins of African Trypanosomes.
PLoS Pathogens. Roč. 20, č. 4 (2024), č. článku e1012186. ISSN 1553-7366. E-ISSN 1553-7374
R&D Projects: GA ČR(CZ) GA22-21612S
Research Infrastructure: CESNET II - 90042; CIISB II - 90127
Institutional support: RVO:61388963
Keywords : x-ray-scattering * protein secondary structure * antigenic determinants
Impact factor: 6.7, year: 2022
Method of publishing: Open access
https://doi.org/10.1371/journal.ppat.1012186
Permanent Link: https://hdl.handle.net/11104/0353423 - 5.0585625 - ÚEB 2025 RIV US eng J - Journal Article
Pavlovič, A. - Kopečná, M. - Hloušková, Lucie - Koller, J. - Hřivňacký, M. - Ilík, P. - Bartoš, Jan
Diethyl ether anaesthesia inhibits de-etiolation of barley seedlings by locking them in intermediate skoto-photomorphogenetic state.
Physiologia Plantarum. Roč. 176, č. 1 (2024), č. článku e14144. ISSN 0031-9317. E-ISSN 1399-3054
Research Infrastructure: e-INFRA CZ II - 90254
Institutional support: RVO:61389030
Keywords : NADPH-PROTOCHLOROPHYLLIDE-OXIDOREDUCTASE * LIGHT-HARVESTING COMPLEXES * A-B PROTEIN
OECD category: Biochemistry and molecular biology
Impact factor: 6.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/ppl.14144
Permanent Link: https://hdl.handle.net/11104/0353305File Download Size Commentary Version Access 2024_Pavlovic_PHYSIOLOGIA PLANTARUM_e14144.pdf 1 10.7 MB Other open-access - 6.0585509 - MBÚ 2025 RIV US eng J - Journal Article
Polák, Marek - Černý, Jiří - Novák, Petr
Isotopic Depletion Increases the Spatial Resolution of FPOP Top-Down Mass Spectrometry Analysis.
Analytical Chemistry. Roč. 96, č. 4 (2024), s. 1478-1487. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA MŠMT(CZ) LX22NPO5107; GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) LM2023055; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : fast photochemical oxidation * amino-acid-residues * radiolytic modification * hydrogen-peroxide * structural probes * molecular-mass * cytochrome-c * protein * peptides * exchange
OECD category: Microbiology
Impact factor: 7.4, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.analchem.3c03759
Permanent Link: https://hdl.handle.net/11104/0353192 - 7.0585463 - ÚOCHB 2025 RIV GB eng J - Journal Article
Častorálová, M. - Sýs, Jakub - Prchal, J. - Pavlů, A. - Prokopová, L. - Briki, Z. - Hubálek, Martin - Ruml, T.
A myristoyl switch at the plasma membrane triggers cleavage and oligomerization of Mason-Pfizer monkey virus matrix protein.
eLife. Roč. 13, March (2024), č. článku e93489. ISSN 2050-084X. E-ISSN 2050-084X
R&D Projects: GA MŠMT(CZ) LX22NPO5103; GA ČR(CZ) GA22-19250S
Institutional support: RVO:61388963
Keywords : hiv-1 gag * type-1 gag * myristoyl switch * betaretrovirus * matrix protein * protease * maturation * Viruses
Impact factor: 7.7, year: 2022
Method of publishing: Open access
https://doi.org/10.7554/eLife.93489
Permanent Link: https://hdl.handle.net/11104/0353250File Download Size Commentary Version Access 10.7554eLife.93489.pdf 0 2.8 MB Publisher’s postprint open-access - 8.0585346 - FGÚ 2025 RIV GB eng J - Journal Article
Němečková, I. - Eissazadeh, S. - Rathouská Urbánková, J. - Šilhavý, Jan - Malínská, H. - Pravenec, Michal - Nachtigal, P.
Transgenic human C-reactive protein affects oxidative stress but not inflammation biomarkers in the aorta of spontaneously hypertensive rats.
BMC Cardiovascular Disorders. Roč. 24, č. 1 (2024), č. článku 211. ISSN 1471-2261. E-ISSN 1471-2261
R&D Projects: GA MŠMT(CZ) LX22NPO5104; GA MŠMT(CZ) LUAUS23095
Institutional support: RVO:67985823
Keywords : C-reactive protein * spontaneously hypertensive rat * aorta * endothelial dysfunction * oxidative stress
OECD category: Cardiac and Cardiovascular systems
Impact factor: 2.1, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s12872-024-03870-7
Permanent Link: https://hdl.handle.net/11104/0353066File Download Size Commentary Version Access 24_0041_0585346.pdf 0 1.7 MB Publisher’s postprint open-access - 9.0585201 - ÚMG 2025 RIV CH eng J - Journal Article
Sulimenko, Vadym - Sládková, Vladimíra - Sulimenko, Tetyana - Dráberová, Eduarda - Vosecká, Věra - Dráberová, Lubica - Skalli, O. - Dráber, Pavel
Regulation of microtubule nucleation in mouse bone marrow-derived mast cells by ARF GTPase-activating protein GIT2.
Frontiers in Immunology. Roč. 15, Feb (2024), č. článku 1321321. ISSN 1664-3224. E-ISSN 1664-3224
R&D Projects: GA MŠMT LX22NPO5102; GA ČR GA21-30281S; GA ČR(CZ) GA23-07736S; GA MŠMT LTAUSA19118; GA MŠMT(CZ) LUC23123; GA MŠMT(CZ) LM2023050
Institutional support: RVO:68378050
Keywords : gamma-tubulin * kinase-c * immune-system * complexes * identification * degranulation * receptor * src * fyn * localization * mast cells * centrosome * G protein-coupled receptor kinase-interacting protein 2 (GIT2) * microtubule nucleation * protein kinase C (PKC)
OECD category: Immunology
Impact factor: 7.3, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2024.1321321/full
Permanent Link: https://hdl.handle.net/11104/0352947 - 10.0585153 - ÚOCHB 2025 RIV NL eng J - Journal Article
Feidakis, C. P. - Křivák, Radoslav - Hoksza, D. - Novotný, M.
AHoJ-DB: A PDB-wide Assignment of apo & holo Relationships Based on Individual Protein-Ligand Interactions.
Journal of Molecular Biology. (2024), č. článku 168545. ISSN 0022-2836. E-ISSN 1089-8638
R&D Projects: GA MŠMT(CZ) LM2018131
Research Infrastructure: e-INFRA CZ II - 90254
Institutional support: RVO:61388963
Keywords : apo-holo * protein structure * ligands * binding sites * drug design
Impact factor: 5.6, year: 2022
Method of publishing: Limited access
https://doi.org/10.1016/j.jmb.2024.168545
Permanent Link: https://hdl.handle.net/11104/0352895