Search results
- 1.0576802 - BFÚ 2024 RIV NL eng J - Journal Article
Vacek, J. - Zatloukalová, M. - Bartheldyová, E. - Řeha, D. - Minofar, B. - Bednářová, Klára - Renčiuk, Daniel - Coufal, Jan - Fojta, Miroslav - Žádný, Jaroslav - Gessini, A. - Rossi, B. - Storch, Jan - Kabeláč, M.
Hexahelicene DNA-binding: Minor groove selectivity, semi-intercalation and chiral recognition.
International Journal of Biological Macromolecules. Roč. 250, 1 October 2023 (2023), č. článku 125905. ISSN 0141-8130. E-ISSN 1879-0003
R&D Projects: GA TA ČR TA04010082; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707 ; RVO:67985858
Keywords : Chirality * Nucleic acids * B-DNA double helix * Semi-intercalation * [6]helicene * Imidazolium
OECD category: Organic chemistry; Organic chemistry (UCHP-M)
Impact factor: 8.2, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0141813023028003?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0346205File Download Size Commentary Version Access 1-s2.0-S0141813023028003-main.pdf 0 8.2 MB Publisher’s postprint require - 2.0564038 - BFÚ 2023 RIV NL eng J - Journal Article
Stein, M. - Hile, S. E. - Weissensteiner, M. H. - Lee, M. - Zhang, S. - Kejnovský, Eduard - Kejnovská, Iva - Makova, K.D. - Eckert, K.
Variation in G-quadruplex sequence and topology differentially impacts human DNA polymerase fidelity.
Dna Repair. Roč. 119, NOV 2022 (2022), č. článku 103402. ISSN 1568-7864. E-ISSN 1568-7856
Institutional support: RVO:68081707
Keywords : Non-B DNA * Error signature * DNA replication * DNA polymerase ?
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.8, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S1568786422001355?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340580 - 3.0558371 - BFÚ 2023 RIV CH eng J - Journal Article
Bowater, R. - Bohalova, Natalia - Brázda, Václav
Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids.
International Journal of Molecular Sciences. Roč. 23, č. 11 (2022), č. článku 6171. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : non-b dna * holliday junction * escherichia-coli * preferential binding * genetic instability * superhelical dna
OECD category: Biochemistry and molecular biology
Impact factor: 5.6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/1422-0067/23/11/6171
Permanent Link: https://hdl.handle.net/11104/0340691 - 4.0555405 - BFÚ 2022 RIV US eng J - Journal Article
Mráziková, Klaudia - Šponer, Jiří - Mlýnský, Vojtech - Auffinger, P. - Kruse, Holger
Short-Range Imbalances in the AMBER Lennard-Jones Potential for (Deoxy)Ribose center dot center dot center dot Nucleobase Lone-Pair center dot center dot center dot pi Contacts in Nucleic Acids.
Journal of Chemical Information and Modeling. Roč. 61, č. 11 (2021), s. 5644-5657. ISSN 1549-9596. E-ISSN 1549-960X
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA21-23718S
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * polarizable force-field * basis-sets * base stacking * b-dna
OECD category: Pharmacology and pharmacy
Impact factor: 6.162, year: 2021
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.jcim.1c01047
Permanent Link: http://hdl.handle.net/11104/0329926 - 5.0555058 - BFÚ 2023 RIV CH eng J - Journal Article
Bartas, M. - Slychko, K. - Brázda, Václav - Cerveny, J. - Beaudoin, C. - Blundell, T. L. - Pečinka, Petr
Searching for New Z-DNA/Z-RNA Binding Proteins Based on Structural Similarity to Experimentally Validated Z alpha Domain.
International Journal of Molecular Sciences. Roč. 23, č. 2 (2022), č. článku 768. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : editing enzyme adar1 * z-beta domain * handed z-dna * non-b dna * crystal-structure
OECD category: Biochemistry and molecular biology
Impact factor: 5.6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/1422-0067/23/2/768
Permanent Link: https://hdl.handle.net/11104/0340266 - 6.0551529 - BFÚ 2023 RIV NL eng J - Journal Article
Brázda, Václav - Bohalova, Natalia - Bowater, R. P.
New telomere to telomere assembly of human chromosome 8 reveals a previous underestimation of G-quadruplex forming sequences and inverted repeats.
Gene. Roč. 810, FEB 5 2022 (2022), č. článku 146058. ISSN 0378-1119. E-ISSN 1879-0038
R&D Projects: GA ČR(CZ) GA18-15548S
Institutional support: RVO:68081707
Keywords : messenger-rna * dna * G-quadruplex * Inverted repeat * Genome sequence of human chromosome 8 * Non-B DNA structures
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0378111921006533?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340615 - 7.0546407 - BFÚ 2022 RIV FR eng J - Journal Article
Bohalova, Natalia - Mergny, Jean-Louis - Brázda, Václav
Novel G-quadruplex prone sequences emerge in the complete assembly of the human X chromosome.
Biochimie. Roč. 191, DEC 2021 (2021), s. 87-90. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : G-quadruplex * Chromosome X * G4Hunter * Bioinformatics * Non-B DNA
OECD category: Biochemistry and molecular biology
Impact factor: 4.372, year: 2021
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0300908421002078?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0322927 - 8.0544549 - BFÚ 2022 RIV NL eng J - Journal Article
Brázda, Václav - Bartas, M. - Bowater, R. P.
Evolution of Diverse Strategies for Promoter Regulation.
Trends in Genetics. Roč. 37, č. 8 (2021), s. 730-744. ISSN 0168-9525. E-ISSN 1362-4555
R&D Projects: GA ČR(CZ) GA18-15548S
Institutional support: RVO:68081707
Keywords : inverted repeat sequences * g-quadruplex structures * dna g-quadruplex * non-b dna * gene-regulation * transposable elements
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 11.821, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0168952521000846
Permanent Link: http://hdl.handle.net/11104/0321397 - 9.0537822 - BFÚ 2021 RIV DE eng J - Journal Article
Kruse, Holger - Mráziková, Klaudia - D'Ascenzo, L. - Šponer, Jiří - Auffinger, P.
Short but Weak: The Z-DNA Lone-Pair center dot center dot center dot pi Conundrum Challenges Standard Carbon Van der Waals Radii.
Angewandte Chemie - International Edition. Roč. 59, č. 38 (2020), s. 16553-16560. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : stacking interactions * aromatic rings * b-dna * crystals * recognition * bonds
OECD category: Inorganic and nuclear chemistry
Impact factor: 15.336, year: 2020
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/10.1002/anie.202004201
Permanent Link: http://hdl.handle.net/11104/0315658 - 10.0485741 - BFÚ 2018 RIV CH eng J - Journal Article
Brázda, Václav - Coufal, Jan
Recognition of Local DNA Structures by p53 Protein.
International Journal of Molecular Sciences. Roč. 18, č. 2 (2017), č. článku 375. E-ISSN 1422-0067
R&D Projects: GA ČR GA15-21855S
Institutional support: RVO:68081707
Keywords : tumor-suppressor protein * c-terminal domain * non-b dna
OECD category: Biochemistry and molecular biology
Impact factor: 3.687, year: 2017
Permanent Link: http://hdl.handle.net/11104/0280686