Search results
- 1.0579881 - ÚMG 2025 RIV NL eng J - Journal Article
Durydivka, Oleh - Gazdarica, Matej - Večerková, Kateřina - Radenkovic, Silvia - Blahoš, Jaroslav
Multiple Sgip1 splice variants inhibit cannabinoid receptor 1 internalization.
Gene. Roč. 892, Jan (2024), č. článku 147851. ISSN 0378-1119. E-ISSN 1879-0038
R&D Projects: GA ČR GA19-24172S; GA ČR GA21-02371S; GA MŠMT(CZ) LM2023050; GA MŠMT LM2023036; GA MŠMT EF18_046/0015861
Institutional support: RVO:68378050
Keywords : amino-acid-composition * protein-phosphorylation * platform * association * enrichment * domain * Alternative splicing * Cannabinoid receptor * Clathrin-mediated endocytosis * Isoform * Molecular cloning * RNA
OECD category: Cell biology
Impact factor: 3.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0378111923006923?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0348669 - 2.0575856 - ÚEB 2024 RIV GB eng J - Journal Article
Timofeyenko, Ksenia - Kanavalau, D. - Alexiou, P. - Kalyna, M. - Růžička, Kamil
Catsnap: a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing.
New Phytologist. Roč. 238, č. 4 (2023), s. 1722-1732. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA ČR(CZ) GA23-08067S; GA MŠMT(CZ) EF16_019/0000738
Institutional support: RVO:61389030
Keywords : alternative splicing * bioinformatics * determinism * isoforms * machine learning * molecular evolution * transcriptome
OECD category: Environmental biotechnology
Impact factor: 9.4, year: 2022
Method of publishing: Open access
https://doi.org/10.1111/nph.18799
Permanent Link: https://hdl.handle.net/11104/0345561File Download Size Commentary Version Access 2023_Timofeyenko_New Phytologist_1722___@@@.pdf 1 887.1 KB Other open-access - 3.0565617 - ÚEB 2023 RIV GB eng J - Journal Article
Kashkan, Ivan - Timofeyenko, Ksenia - Růžička, Kamil
How alternative splicing changes the properties of plant proteins.
Quantitative Plant Biology. Roč. 3, Jul (2022), č. článku e14. E-ISSN 2632-8828
R&D Projects: GA MŠMT(CZ) EF16_019/0000738
Institutional support: RVO:61389030
Keywords : alternative splicing * competitive inhibition * feedback loop
OECD category: Biochemical research methods
Method of publishing: Open access
https://doi.org/10.1017/qpb.2022.9
Permanent Link: https://hdl.handle.net/11104/0337134File Download Size Commentary Version Access 2022_Kashkan_Quantitative Plant Biology_e14.pdf 2 573 KB Other open-access - 4.0562222 - ÚBO 2023 RIV GB eng J - Journal Article
Liu, M. - Yu, C. - Zhang, Z. - Song, M. - Sun, X. - Piálek, Jaroslav - Jacob, J. - Lu, J. - Cong, L. - Zhang, H. - Wang, Y. - Li, G. - Feng, Z. - Du, Z. - Wang, M. - Wan, X. - Wang, D. - Wang, Y.-L. - Li, H. - Wang, Z. - Zhang, B. - Zhang, Z.
Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice.
Genome Biology. Roč. 23, č. 1 (2022), č. článku 203. ISSN 1474-760X. E-ISSN 1474-760X
R&D Projects: GA ČR(CZ) GA16-23773S
Institutional support: RVO:68081766
Keywords : Mus musculus * Domestication * Positively selected gene * Genome sequencing * Alternative splicing
OECD category: Zoology
Impact factor: 12.3, year: 2022
Method of publishing: Open access
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02772-1
Permanent Link: https://hdl.handle.net/11104/0334839File Download Size Commentary Version Access 0562222.pdf 0 3.3 MB Publisher’s postprint open-access - 5.0559398 - BC 2023 RIV SE eng J - Journal Article
Selinger, Martin - Věchtová, P. - Tykalová, Hana - Oslejskova, P. - Rumlová, M. - Štěrba, J. - Grubhoffer, Libor
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors.
Computational and Structural Biotechnology Journal. Roč. 20, JUN (2022), s. 2759-2777. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA MŠMT(CZ) LTARF18021; GA ČR(CZ) GA18-27204S
Institutional support: RVO:60077344
Keywords : Alternative splicing * Astrocytes * miRNA * Neurons * Response to infection * Neuropathogenesis * Tick-borne encephalitis virus * Transcriptomics
OECD category: Microbiology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022002070?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340284 - 6.0556808 - FGÚ 2023 RIV CH eng J - Journal Article
Lusk, R. - Hoffman, P.L. - Mahaffey, S. - Rosean, S. - Smith, H. - Šilhavý, Jan - Pravenec, Michal - Tabakoff, B. - Saba, L. M.
Beyond Genes: Inclusion of Alternative Splicing and Alternative Polyadenylation to Assess the Genetic Architecture of Predisposition to Voluntary Alcohol Consumption in Brain of the HXB/BXH Recombinant Inbred Rat Panel.
Frontiers in genetics. Roč. 13, Mar 15 (2022), č. článku 821026. E-ISSN 1664-8021
R&D Projects: GA ČR(CZ) GA13-04420S
Grant - others:AV ČR(CZ) AP1502
Program: Akademická prémie - Praemium Academiae
Institutional support: RVO:67985823
Keywords : voluntary alcohol consumption * alternative splicing * alternative polyadenylation * HXB/BXH recombinant inbred strains
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 3.7, year: 2022
Method of publishing: Open access
https://doi.org/10.3389/fgene.2022.821026
Permanent Link: http://hdl.handle.net/11104/0331116 - 7.0555576 - BFÚ 2022 RIV SE eng J - Journal Article
Vičar, Tomáš - Gumulec, J. - Kolář, R. - Kopečná, Olga - Pagáčová, Eva - Falková, Iva - Falk, Martin
DeepFoci: Deep learning-based algorithm for fast automatic analysis of DNA double-strand break ionizing radiation-induced foci.
Computational and Structural Biotechnology Journal. Roč. 19, DEC 2021 (2021), s. 6465-6480. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR GC20-04109J; GA ČR(CZ) GA19-09212S
Institutional support: RVO:68081707
Keywords : alternative splicing variant * complex cell responses * gamma-h2ax foci * chromatin-structure * h2ax phosphorylation * nanoscopy techniques * histone h2ax
OECD category: Biochemistry and molecular biology
Impact factor: 6.155, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037021004840?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0330038 - 8.0552833 - ÚEB 2022 RIV GB eng J - Journal Article
Kashkan, Ivan - Hrtyan, M. - Retzer, Katarzyna - Humpolíčková, Jana - Jayasree, A. - Filepová, Roberta - Vondráková, Zuzana - Simon, Sibu - Rombaut, D. - Jacobs, T. B. - Frilander, M. J. - Hejátko, J. - Friml, J. - Petrášek, Jan - Růžička, Kamil
Mutually opposing activity of PIN7 splicing isoforms is required for auxin-mediated tropic responses in Arabidopsis thaliana.
New Phytologist. Roč. 233, č. 1 (2022), s. 329-343. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA ČR(CZ) GA19-23773S; GA ČR(CZ) GA19-18917S; GA MŠMT(CZ) EF16_019/0000738; GA MŠMT(CZ) LM2018129; GA MŠMT(CZ) EF16_013/0001775
Institutional support: RVO:61389030 ; RVO:61388963
Keywords : alternative splicing * Arabidopsis thaliana * auxin * auxin transport * frap * PINs * plant development * RNA processing
OECD category: Developmental biology; Plant sciences, botany (UOCHB-X)
Impact factor: 9.4, year: 2022
Method of publishing: Open access
http://doi.org/10.1111/nph.17792
Permanent Link: http://hdl.handle.net/11104/0327927File Download Size Commentary Version Access 2022_Kashkan_NEW PHYTOLOGIST_329.pdf 1 3.4 MB Other open-access - 9.0549498 - ÚEB 2022 RIV GB eng J - Journal Article
Fernandez-Pozo, N. - Metz, T. - Chandler, J. O. - Gramzow, L. - Mérai, Z. - Maumus, F. - Mittelsten Scheid, O. - Theißen, G. - Schranz, M. E. - Leubner-Metzger, Gerhard - Rensing, S. A.
Aethionema arabicum genome annotation using PacBio full-length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research.
Plant Journal. Roč. 106, č. 1 (2021), s. 275-293. ISSN 0960-7412. E-ISSN 1365-313X
Institutional support: RVO:61389030
Keywords : Aethionema arabicum * alternative splicing * Brassicaceae evolution * genome annotation * Iso-seq * seed germination * transcription factors
OECD category: Biochemistry and molecular biology
Impact factor: 7.091, year: 2021
Method of publishing: Open access
http://doi.org/10.1111/tpj.15161
Permanent Link: http://hdl.handle.net/11104/0325491File Download Size Commentary Version Access 2021_Fernandez-Pozo_PLANT JOURNAL_275.pdf 1 1.4 MB Other open-access - 10.0545997 - ÚEB 2022 RIV GB eng J - Journal Article
Záveská Drábková, Lenka - Honys, David - Motyka, Václav
Evolutionary diversification of cytokinin-specific glucosyltransferases in angiosperms and enigma of missing cis-zeatin O-glucosyltransferase gene in Brassicaceae.
Scientific Reports. Roč. 11, č. 1 (2021), č. článku 7885. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA19-02699S; GA ČR(CZ) GA19-12262S; GA MŠMT(CZ) EF16_019/0000738
Institutional support: RVO:61389030
Keywords : alternative splicing landscape * phylogenetic analysis * multigene family * protein homology * carica-papaya * genome * glycosyltransferases * arabidopsis * phaseolus * biosynthesis
OECD category: Plant sciences, botany
Impact factor: 4.997, year: 2021
Method of publishing: Open access
http://doi.org/10.1038/s41598-021-87047-8
Permanent Link: http://hdl.handle.net/11104/0322592File Download Size Commentary Version Access 2021_Záveská Drábková_Scientific Reports_7885.pdf 1 7.1 MB Other open-access