Search results
- 1.0600747 - BFÚ 2025 RIV DE eng J - Journal Article
Gajarský, M. - Stadlbauer, Petr - Šponer, Jiří - Cucchiarini, A. - Dobrovolná, Michaela - Brázda, Václav - Mergny, Jean-Louis - Trantírek, L. - Zivkovic, M.L.
DNA Quadruplex Structure with a Unique Cation Dependency.
Angewandte Chemie - International Edition. Roč. 63, č. 7 (2024), č. článku e202313226. ISSN 1433-7851. E-ISSN 1521-3773
R&D Projects: GA ČR(CZ) GA21-23718S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : telomeric g-quadruplex * amber force-field * center-dot-g * molecular-dynamics * nucleic-acids * k+ solution * simulations * insights * reveals
OECD category: Organic chemistry
Impact factor: 16.1, year: 2023 ; AIS: 3.762, rok: 2023
Method of publishing: Open access
Result website:
https://onlinelibrary.wiley.com/doi/10.1002/anie.202313226DOI: https://doi.org/10.1002/anie.202313226
Permanent Link: https://hdl.handle.net/11104/0358042 - 2.0600734 - BFÚ 2025 RIV US eng J - Journal Article
Lyčka, M. - Bubenik, M. - Zavodnik, M. - Peška, Vratislav - Fajkus, Petr - Demko, M. - Fajkus, Jiří - Fojtová, M.
TeloBase: a community-curated database of telomere sequences across the tree of life.
Nucleic Acids Research. Roč. 52, č. D1 (2024), D311-D321. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GX20-01331X
Institutional support: RVO:68081707
Keywords : aspergillus-oryzae * plant * evolution * repeats * identification * localization * conservation * chromosomes * arabidopsis * diversity
OECD category: Biochemistry and molecular biology
Impact factor: 16.6, year: 2023 ; AIS: 5.854, rok: 2023
Method of publishing: Open access
Result website:
https://academic.oup.com/nar/article/52/D1/D311/7246534?login=trueDOI: https://doi.org/10.1093/nar/gkad672
Permanent Link: https://hdl.handle.net/11104/0358028 - 3.0597824 - BFÚ 2025 RIV US eng J - Journal Article
Palacký, Jan - Školáková, Petra - Renčiuk, Daniel - Mojzes, P. - Rossi, B. - Matroodi, F. - Vorlíčková, Michaela
DNA i-motif formation at physiological pH revealed by Raman spectroscopy.
Journal of Raman Spectroscopy. Roč. 55, č. 1 (2024), s. 43-57. ISSN 0377-0486. E-ISSN 1097-4555
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : cytosine i-motif DNA * Raman spectroscopy * singular value decomposition
OECD category: Cell biology
Impact factor: 2.4, year: 2023 ; AIS: 0.535, rok: 2023
Method of publishing: Open access
Result website:
https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/10.1002/jrs.6606DOI: https://doi.org/10.1002/jrs.6606
Permanent Link: https://hdl.handle.net/11104/0355640 - 4.0585257 - BFÚ 2025 RIV US eng J - Journal Article
Viskova, P. - Istvankova, E. - Ryneš, J. - Dzatko, S. - Loja, T. - Zivkovic, M.L. - Rigo, R. - El-Khoury, R. - Serrano-Chacon, I. - Damha, Masad J. - González, C. - Mergny, Jean-Louis - Foldynová-Trantírková, Silvie - Trantírek, L.
In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells.
Nature Communications. Roč. 15, č. 1 (2024), č. článku 1992. ISSN 2041-1723. E-ISSN 2041-1723
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : cytosine-rich strand * g-quadruplex * hnrnp ll * molecular switch * gene-expression * loop length * stability * sequences * domains * protein
OECD category: Biochemistry and molecular biology
Impact factor: 14.7, year: 2023 ; AIS: 5.656, rok: 2023
Method of publishing: Open access
Result website:
https://www.nature.com/articles/s41467-024-46221-yDOI: https://doi.org/10.1038/s41467-024-46221-y
Permanent Link: https://hdl.handle.net/11104/0358006 - 5.0583721 - BFÚ 2024 RIV NL eng J - Journal Article
Luo, Y. - Granzhan, A. - Marquevielle, J. - Cucchiarini, A. - Lacroix, L. - Amrane, S. - Verga, D. - Mergny, Jean-Louis
Guidelines for G-quadruplexes: I. In vitro characterization.
Biochimie. Roč. 214, NOV 2023 (2023), s. 5-23. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : resonance energy-transfer * single-stranded-dna * rna g-quadruplexes * circular-dichroism * nucleic-acids * thioflavin t * fluorescent-probes
OECD category: Biochemistry and molecular biology
Impact factor: 3.3, year: 2023 ; AIS: 0.725, rok: 2023
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S0300908422003443?via%3DihubDOI: https://doi.org/10.1016/j.biochi.2022.12.019
Permanent Link: https://hdl.handle.net/11104/0351718 - 6.0583620 - BFÚ 2024 RIV US eng J - Journal Article
Porubiakova, Otilia - Havlík, J. - Indu, Indu - Sedy, M. - Přepechalová, Veronika - Bartas, M. - Bidula, S. - Šťastný, J. - Fojta, Miroslav - Brázda, Václav
Variability of Inverted Repeats in All Available Genomes of Bacteria.
Microbiology Spectrum. Roč. 11, č. 4 (2023). ISSN 2165-0497. E-ISSN 2165-0497
R&D Projects: GA ČR(CZ) GA22-21903S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : dna-structure * sticky dna * sp-nov. * evolution * stability * binding * server * gene * rnas
OECD category: Microbiology
Impact factor: 3.7, year: 2023 ; AIS: 1.019, rok: 2023
Method of publishing: Open access
Result website:
https://journals.asm.org/doi/epub/10.1128/spectrum.01648-23DOI: https://doi.org/10.1128/spectrum.01648-23
Permanent Link: https://hdl.handle.net/11104/0351624 - 7.0583599 - BFÚ 2024 RIV NL eng J - Journal Article
Brázda, Václav - Mergny, Jean-Louis
Quadruplexes and aging: G4-binding proteins regulate the presence of miRNA in small extracellular vesicles (sEVs).
Biochimie. Roč. 214, NOV 2023 (2023), s. 69-72. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : small-molecule * translation * mechanism * insights * biology * binding * dna * RNA-Binding protein * Exosome
OECD category: Biochemistry and molecular biology
Impact factor: 3.3, year: 2023 ; AIS: 0.725, rok: 2023
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S0300908423000147?via%3DihubDOI: https://doi.org/10.1016/j.biochi.2023.01.014
Permanent Link: https://hdl.handle.net/11104/0351605 - 8.0583204 - BFÚ 2025 RIV NL eng J - Journal Article
Dobrovodský, Daniel - Daňhel, Aleš - Renčiuk, Daniel - Mergny, Jean-Louis - Fojta, Miroslav
N-methyl mesoporphyrin IX (NMM) as electrochemical probe for detection of guanine quadruplexes.
Bioelectrochemistry. Roč. 156, April 2024 (2024), č. článku 108611. ISSN 1567-5394. E-ISSN 1878-562X
R&D Projects: GA ČR(CZ) GA22-11252S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : circular-dichroism * g-quartet * dna * metalloporphyrins * fluorescence * porphyrins
OECD category: Biochemistry and molecular biology
Impact factor: 4.8, year: 2023 ; AIS: 0.728, rok: 2023
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S1567539423002487?via%3DihubDOI: https://doi.org/10.1016/j.bioelechem.2023.108611
Permanent Link: https://hdl.handle.net/11104/0351206 - 9.0582377 - BFÚ 2025 RIV US eng J - Journal Article
Brázda, Václav - Valková, Natalia - Dobrovolná, Michaela - Mergny, Jean-Louis
Abundance of G-Quadruplex Forming Sequences in the Hepatitis Delta Virus Genomes.
ACS Omega. Roč. 9, č. 3 (2024), s. 4096-4101. ISSN 2470-1343. E-ISSN 2470-1343
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : rna g-quadruplex * dna
OECD category: Biochemistry and molecular biology
Impact factor: 3.7, year: 2023 ; AIS: 0.637, rok: 2023
Method of publishing: Open access
Result website:
https://pubs.acs.org/doi/10.1021/acsomega.3c09288DOI: https://doi.org/10.1021/acsomega.3c09288
Permanent Link: https://hdl.handle.net/11104/0352960 - 10.0582139 - BFÚ 2024 RIV US eng J - Journal Article
Fajkus, Petr - Adámik, Matěj - Nelson, A. D. L. - Kilar, A. - Franek, M. - Bubenik, M. - Čapková Frydrychová, Radmila - Votavová, A. - Sýkorová, Eva - Fajkus, Jiří - Peška, Vratislav
Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis.
Nucleic Acids Research. Roč. 51, č. 1 (2023), s. 420-433. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GX20-01331X; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707 ; RVO:60077344
Keywords : template-boundary definition * pseudoknot * sequence * identification * mechanisms * promoter * element * repeats * gene
OECD category: Biochemistry and molecular biology; Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 16.6, year: 2023 ; AIS: 5.854, rok: 2023
Method of publishing: Open access
Result website:
https://academic.oup.com/nar/article/51/1/420/6956357?login=trueDOI: https://doi.org/10.1093/nar/gkac1202
Permanent Link: https://hdl.handle.net/11104/0350217