Search results
- 1.0641436 - BFÚ 2026 RIV DE eng J - Journal Article
Školáková, Petra - Kejnovská, Iva - Renčiuk, Daniel
Spectroscopic studies of sequence-dependent conformational transitions in asymmetric G/C rich double-stranded DNA.
European Biophysics Journal With Biophysics Letters. (2025). ISSN 0175-7571. E-ISSN 1432-1017
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA22-29738S
Institutional support: RVO:68081707
Keywords : Circular dichroism spectroscopy * Guanine quadruplex * Cytosine i-motif * Conformation equilibrium
OECD category: Biophysics
Impact factor: 2.4, year: 2024 ; AIS: 0.567, rok: 2024
Method of publishing: Open access
Result website:
https://link.springer.com/article/10.1007/s00249-025-01767-7?utm_source=getftr&utm_medium=getftr&utm_campaign=getftr_pilot&getft_integrator=clarivateDOI: https://doi.org/10.1007/s00249-025-01767-7
Permanent Link: https://hdl.handle.net/11104/0371584 - 2.0640724 - BFÚ 2026 RIV NL eng J - Journal Article
Havran, Luděk - Šebest, Peter - Tüzün, Ece Zeynep - Grüner, Bohumír - Fojta, Miroslav - Fojt, Lukáš
Two-step DNA redox labelling with borane cluster compounds.
Bioelectrochemistry. Roč. 168 (2026), č. článku 109131. ISSN 1567-5394. E-ISSN 1878-562X
R&D Projects: GA ČR(CZ) GA19-04630S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707 ; RVO:61388980
Keywords : Electrochemistry * boron cluster compounds * DNA redox labelling * carbon electrode * derivatives * indicators * chemistry * electrochemistry * carbon electrodes
OECD category: Biochemistry and molecular biology; 1.4 Chemical sciences (UACH-T)
Impact factor: 4.5, year: 2024 ; AIS: 0.754, rok: 2024
Method of publishing: Open access
Result website:
https://www.sciencedirect.com/science/article/pii/S1567539425002348?pes=vor&utm_source=clarivate&getft_integrator=clarivateDOI: https://doi.org/10.1016/j.bioelechem.2025.109131
Permanent Link: https://hdl.handle.net/11104/0371304 - 3.0639192 - BFÚ 2026 RIV US eng J - Journal Article
Pokorná, Pavlína - Mlýnský, Vojtech - Šponer, Jiří - Stadlbauer, Petr
RNA G-quadruplexes emerge from a compacted coil-like ensemble via multiple pathways.
Nucleic Acids Research. Roč. 53, č. 17 (2025), č. článku gkaf872. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * repeat-containing rna * folding pathways * force-field * energy landscape * nucleic-acids * g-triplex * dna * binding * sequence
OECD category: Biochemistry and molecular biology
Impact factor: 13.1, year: 2024 ; AIS: 5.99, rok: 2024
Method of publishing: Open access
DOI: https://doi.org/10.1093/nar/gkaf872
Permanent Link: https://hdl.handle.net/11104/0371414 - 4.0639191 - BFÚ 2026 RIV US eng J - Journal Article
Ghosh, A. - Harnoš, J. - Stadlbauer, Petr - Šponer, Jiří - Zivkovic, M.L. - Trantírek, L.
Structural basis of bis-quinolinium ligands binding to quadruplex-duplex hybrids from PIM1 oncogene.
Nucleic Acids Research. Roč. 53, č. 17 (2025), č. článku gkaf894. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * particle mesh ewald * amber force-field * nucleic-acids * nmr-spectroscopy * dna * suppression * integration * excitation * promoters
OECD category: Biochemistry and molecular biology
Impact factor: 13.1, year: 2024 ; AIS: 5.99, rok: 2024
Method of publishing: Open access
Result website:
https://academic.oup.com/nar/article/53/17/gkaf894/8251892?login=trueDOI: https://doi.org/10.1093/nar/gkaf894
Permanent Link: https://hdl.handle.net/11104/0371665 - 5.0635564 - BFÚ 2026 RIV US eng J - Journal Article
Cucchiarini, A. - Dobrovolná, Michaela - Brázda, Václav - Mergny, Jean-Louis
Analysis of quadruplex propensity of aptamer sequences.
Nucleic Acids Research. Roč. 53, č. 9 (2025), č. článku gkaf424. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA22-21903S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : in-vitro selection * dna aptamers * selex * capture * bias
OECD category: Biochemistry and molecular biology
Impact factor: 13.1, year: 2024 ; AIS: 5.99, rok: 2024
Method of publishing: Open access
Result website:
https://academic.oup.com/nar/article/53/9/gkaf424/8133626?login=trueDOI: https://doi.org/10.1093/nar/gkaf424
Permanent Link: https://hdl.handle.net/11104/0368199 - 6.0627729 - BFÚ 2026 RIV NL eng J - Journal Article
Hesko, Ondřej - Pivoňková, Hana - Fojt, Lukáš - Taylor, Andrew - Kopeček, Jaromír - Schwarzová-Pecková, K. - Fojta, Miroslav
Characterization of boron doped diamond electrodes with engineered sp2 carbon content and their application to structure-dependent DNA hybridization.
Bioelectrochemistry. Roč. 164, AUG 2025 (2025), č. článku 108910. ISSN 1567-5394. E-ISSN 1878-562X
R&D Projects: GA ČR(CZ) GA23-05688S; GA MŠMT LM2023051; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707 ; RVO:68378271
Keywords : transfer kinetics * g-quadruplexes * doping level * surface * morphology * electrochemistry * impact * bases
OECD category: Biochemistry and molecular biology; Electrochemistry (dry cells, batteries, fuel cells, corrosion metals, electrolysis) (FZU-D)
Impact factor: 4.5, year: 2024 ; AIS: 0.754, rok: 2024
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S1567539425000131?via%3DihubDOI: https://doi.org/10.1016/j.bioelechem.2025.108910
Permanent Link: https://hdl.handle.net/11104/0366521 - 7.0618564 - BFÚ 2025 RIV GB eng J - Journal Article
Hermanová, Monika - Soldanová, Zuzana - Hrušková, Marcela - Havran, Luděk - Fojta, Miroslav
Detection of thymine stretches in DNA oligonucleotides at the surface of hanging mercury drop electrode using thymine-mercury base pair formation.
Electrochimica acta. Roč. 512, FEB 1 2025 (2024), č. článku 145498. ISSN 0013-4686. E-ISSN 1873-3859
R&D Projects: GA ČR(CZ) GF21-46325L; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : label-free detection * electrochemical detection * ions * binding * voltammetry * derivatives * biosensor * purine
OECD category: Electrochemistry (dry cells, batteries, fuel cells, corrosion metals, electrolysis)
Impact factor: 5.6, year: 2024 ; AIS: 0.825, rok: 2024
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S0013468624017341?via%3DihubDOI: https://doi.org/10.1016/j.electacta.2024.145498
Permanent Link: https://hdl.handle.net/11104/0365445 - 8.0617108 - BFÚ 2026 RIV NL eng J - Journal Article
Dobrovolná, Michaela - Mergny, Jean-Louis - Brázda, Václav
Complete analysis of G-quadruplex forming sequences in the gapless assembly of human chromosome Y.
Biochimie. Roč. 229, FEB 2025 (2025), s. 49-57. ISSN 0300-9084. E-ISSN 1638-6183
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA22-21903S
Institutional support: RVO:68081707
Keywords : Gapless assembly * Chromosome Y * G-quadruplex * Genome analysis
OECD category: Biochemistry and molecular biology
Impact factor: 3, year: 2024 ; AIS: 0.729, rok: 2024
Method of publishing: Open access
Result website:
https://www.sciencedirect.com/science/article/pii/S0300908424002335?via%3DihubDOI: https://doi.org/10.1016/j.biochi.2024.10.007
Permanent Link: https://hdl.handle.net/11104/0368198 - 9.0605575 - BFÚ 2026 RIV US eng J - Journal Article
Lemmens, Toon - Šponer, Jiří - Krepl, Miroslav
How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study.
Journal of Chemical Information and Modeling. Roč. 65, č. 2 (2025), s. 896-907. ISSN 1549-9596. E-ISSN 1549-960X
R&D Projects: GA MŠMT EF15_003/0000477; GA ČR(CZ) GA23-05639S
Institutional support: RVO:68081707
Keywords : pre-ribosomal-rna * recognition motifs * structural basis * cap analog * parameters * proteins * sequence * nmr
OECD category: Biochemistry and molecular biology
Impact factor: 5.3, year: 2024 ; AIS: 1.526, rok: 2024
Method of publishing: Open access
Result website:
https://pubs.acs.org/doi/10.1021/acs.jcim.4c01954DOI: https://doi.org/10.1021/acs.jcim.4c01954
Permanent Link: https://hdl.handle.net/11104/0368169 - 10.0605521 - BFÚ 2025 RIV US eng J - Journal Article
Frohlking, T. - Mlýnský, Vojtech - Janeček, M. - Kührová, P. - Krepl, Miroslav - Banáš, P. - Šponer, Jiří - Bussi, G.
Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field.
Journal of Chemical Theory and Computation. Roč. 18, č. 7 (2022), s. 4490-4502. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA ČR(CZ) GA20-16554S; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : molecular-dynamics simulations * enhanced sampling techniques * free-energy landscape * crystal-structure * replica exchange * nucleic-acids * parameters * resolution * tetraloop * motifs
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022 ; AIS: 1.448, rok: 2022
Method of publishing: Open access
Result website:
https://pubs.acs.org/doi/epdf/10.1021/acs.jctc.2c00200?ref=article_openPDF
DOI: https://doi.org/10.1021/acs.jctc.2c00200
Permanent Link: https://hdl.handle.net/11104/0363247