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  1. 1.
    0536178 - ÚFCH JH 2021 RIV US eng J - Journal Article
    Olžyńska, Agnieszka - Kulig, W. - Mikkolainen, H. - Czerniak, T. - Jurkiewicz, Piotr - Cwiklik, Lukasz - Rog, T. - Hof, Martin - Jungwirth, Pavel - Vattulainen, I.
    Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes.
    Langmuir. Roč. 36, č. 35 (2020), s. 10438-10447. ISSN 0743-7463
    R&D Projects: GA ČR(CZ) GX19-26854X; GA ČR(CZ) GA18-26751S; GA ČR(CZ) GA17-06792S
    Institutional support: RVO:61388955 ; RVO:61388963
    Keywords : molecular-dynamics simulations * alkyl chain unsaturation * atom force-field * lipid-bilayer * phospholipids * liposomes * oxidation * translocation * transitions * oxysterols
    Subject RIV: CF - Physical ; Theoretical Chemistry; CF - Physical ; Theoretical Chemistry (UOCHB-X)
    OBOR OECD: Physical chemistry; Physical chemistry (UOCHB-X)
    Impact factor: 3.557, year: 2019
    http://hdl.handle.net/11104/0313993
    Permanent Link: http://hdl.handle.net/11104/0313993
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    0536178.pdf02.6 MBopen accessPublisher’s postprintopen-access
     
  2. 2.
    0535216 - ÚOCHB 2021 RIV US eng J - Journal Article
    Lucendo, E. - Sancho, M. - Lolicato, F. - Javanainen, Matti - Kulig, W. - Leiva, D. - Duart, G. - Andreu-Fernández, V. - Mingarro, I. - Orzáez, M.
    Mcl-1 and Bok transmembrane domains: Unexpected players in the modulation of apoptosis.
    Proceedings of the National Academy of Science of the United Stated of America. Roč. 117, č. 45 (2020), s. 27980-27988. ISSN 1091-6490
    Institutional support: RVO:61388963
    Keywords : apoptosis * Bcl-2 * Bok * Mcl-1 * transmembrane
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 9.580, year: 2018
    https://doi.org/10.1073/pnas.2008885117
    Permanent Link: http://hdl.handle.net/11104/0313479

    Research data: Zenodo
     
  3. 3.
    0524871 - ÚFCH JH 2021 RIV US eng J - Journal Article
    Golda-Cepa, M. - Riedlová, Kamila - Kulig, W. - Cwiklik, Lukasz - Kotarba, A.
    Functionalization of the Parylene C Surface Enhances the Nucleation of Calcium Phosphate: Combined Experimental and Molecular Dynamics Simulations Approach.
    ACS Applied Materials and Interfaces. Roč. 12, č. 11 (2020), s. 12426-12435. ISSN 1944-8244
    R&D Projects: GA ČR(CZ) GA17-06792S
    Institutional support: RVO:61388955
    Keywords : oxygen plasma treatment * biomineralization * coatings * polymer * growth * fabrication * sodium * cells * molecular dynamics * polymer surface
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 8.758, year: 2019
    http://hdl.handle.net/11104/0309117
    Permanent Link: http://hdl.handle.net/11104/0309117
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  4. 4.
    0507094 - ÚOCHB 2020 RIV US eng J - Journal Article
    Javanainen, Matti - Enkavi, G. - Guixa-González, R. - Kulig, W. - Martinez-Seara, Hector - Levental, I. - Vattulainen, I.
    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.
    PLoS Computational Biology. Roč. 15, č. 5 (2019), č. článku e1007033. ISSN 1553-7358
    R&D Projects: GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388963
    Keywords : lipid-protein interactions * A2A adenosine receptor * surface roughness
    Subject RIV: CE - Biochemistry
    OBOR OECD: Biochemistry and molecular biology
    Impact factor: 4.428, year: 2018
    https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007033
    Permanent Link: http://hdl.handle.net/11104/0298164

    Research data: Zenodo, Zenodo, Zenodo
     
  5. 5.
    0503022 - ÚOCHB 2020 RIV US eng J - Journal Article
    Enkavi, G. - Javanainen, Matti - Kulig, W. - Róg, T. - Vattulainen, I.
    Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.
    Chemical Reviews. Roč. 119, č. 9 (2019), s. 5607-5774. ISSN 0009-2665
    Institutional support: RVO:61388963
    Keywords : molecular dynamics simulations * cellular functions * membrane complexity
    Subject RIV: BO - Biophysics
    OBOR OECD: Biophysics
    Impact factor: 52.758, year: 2019
    https://pubs.acs.org/doi/full/10.1021/acs.chemrev.8b00538
    Permanent Link: http://hdl.handle.net/11104/0296595
     
  6. 6.
    0495905 - ÚOCHB 2019 RIV NL eng J - Journal Article
    Mobarak, E. - Javanainen, Matti - Kulig, W. - Honigmann, A. - Sezgin, E. - Aho, N. - Eggeling, Ch. - Rog, T. - Vattulainen, I.
    How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative.
    Biochimica Et Biophysica Acta-Biomembranes. Roč. 1860, č. 11 (2018), s. 2436-2445. ISSN 0005-2736
    Institutional support: RVO:61388963
    Keywords : fluorescent probe * PEG linker * lipid membrane * atomistic simulation * molecular dynamics simulation * super-resolution microscopy
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 3.790, year: 2018
    https://www.sciencedirect.com/science/article/pii/S0005273618301986?via%3Dihub
    Permanent Link: http://hdl.handle.net/11104/0288779
     
  7. 7.
    0489875 - ÚOCHB 2019 RIV US eng J - Journal Article
    Kulig, W. - Mikkolainen, H. - Olžyńska, A. - Jurkiewicz, P. - Cwiklik, Lukasz - Hof, M. - Vattulainen, I. - Jungwirth, Pavel - Rog, T.
    Bobbing of Oxysterols: Molecular Mechanism for Translocation of Tail-Oxidized Sterols through Biological Membranes.
    Journal of Physical Chemistry Letters. Roč. 9, č. 5 (2018), s. 1118-1123. ISSN 1948-7185
    R&D Projects: GA ČR(CZ) GBP208/12/G016; GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388963
    Keywords : oxysterols * membranes * molecular dynamics
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 7.329, year: 2018
    Permanent Link: http://hdl.handle.net/11104/0284191
     
  8. 8.
    0487732 - ÚFCH JH 2019 RIV US eng J - Journal Article
    Kulig, W. - Mikkolainen, H. - Olžyńska, Agnieszka - Jurkiewicz, Piotr - Cwiklik, Lukasz - Hof, Martin - Vattulainen, I. - Jungwirth, P. - Rog, T.
    Bobbing of Oxysterols: Molecular Mechanism for Translocation of Tail-Oxidized Sterols through Biological Membranes.
    Journal of Physical Chemistry Letters. Roč. 9, č. 5 (2018), s. 1118-1123. ISSN 1948-7185
    R&D Projects: GA ČR(CZ) GBP208/12/G016; GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388955
    Keywords : biological membranes * alcohols * cell membranes
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 7.329, year: 2018
    Permanent Link: http://hdl.handle.net/11104/0282365
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  9. 9.
    0477850 - ÚOCHB 2018 RIV US eng J - Journal Article
    Golda-Cepa, M. - Kulig, W. - Cwiklik, Lukasz - Kotarba, A.
    Molecular Dynamics Insights into Water-Parylene C Interface: Relevance of Oxygen Plasma Treatment for Biocompatibility.
    ACS Applied Materials and Interfaces. Roč. 9, č. 19 (2017), s. 16685-16693. ISSN 1944-8244
    Institutional support: RVO:61388963
    Keywords : molecular dynamics * contact angle * surface free energy * parylene C * biomaterials oxygen plasma
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 8.097, year: 2017
    Permanent Link: http://hdl.handle.net/11104/0274071
     
  10. 10.
    0477823 - ÚFCH JH 2018 RIV US eng J - Journal Article
    Golda-Cepa, M. - Kulig, W. - Cwiklik, Lukasz - Kotarba, A.
    Molecular Dynamics Insights into Water-Parylene C Interface: Relevance of Oxygen Plasma Treatment for Biocompatibility.
    ACS Applied Materials and Interfaces. Roč. 9, č. 19 (2017), s. 16685-16693. ISSN 1944-8244
    R&D Projects: GA ČR(CZ) GA17-06792S
    Institutional support: RVO:61388955
    Keywords : molecular dynamics * contact angle * surface free energy * parylene C * biomaterials oxygen plasma
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 8.097, year: 2017
    Permanent Link: http://hdl.handle.net/11104/0274047
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    0477823.pdf123.9 MBPublisher’s postprintrequire