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  1. 1.
    0554216 - BTÚ 2022 RIV CZ eng L4 - Software
    Malý, Martin - Diederichs, K. - Dohnálek, Jan - Kolenko, Petr
    PAIREF.
    Internal code: v1.2.8 ; 2021
    Technical parameters: PAIREF is a Python-based program for the Computational Crystallography Toolbox available for Windows, GNU/Linux and MacOS. Graphical and command-line interfaces are provided. For structure model refinement, PAIREF supports REFMAC5 (part of the CCP4 Software Suite) and phenix.refine (part of the Phenix package). This work is co-developed with the Czech Technical University in Prague, Faculty of Nuclear Sciences and Physical Engineering, Břehová 7, Prague, IČ: 68407700
    Economic parameters: This project was funded by the MEYS CR (projects CAAS – CZ.02.1.01/0.0/0.0/16_019/0000778, BIOCEV – CZ.1.05/1.1.00/02.0109, and ELIBIO – CZ.02.1.01/0.0/0.0/15_003/0000447) from the ERDF fund, by the Czech science foundation (project 18-10687S), by the Czech Academy of Sciences (project 86652036), and by the GA CTU in Prague (SGS19/189/OHK4/3T/14). This work is co-developed with the Czech Technical University in Prague, Faculty of Nuclear Sciences and Physical Engineering, Břehová 7, Prague, IČ: 68407700
    R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT EF15_003/0000447; GA ČR(CZ) GA18-10687S
    Institutional support: RVO:86652036
    Keywords : X-ray diffraction * structure refinement * data resolution
    OECD category: Biochemistry and molecular biology
    https://pairef.fjfi.cvut.cz/
    Permanent Link: http://hdl.handle.net/11104/0328837
     

    Research data: Zenodo
     
  2. 2.
    0452202 - BTÚ 2016 RIV CZ eng L4 - Software
    Černý, Jiří - Biedermannová, Lada - Schneider, Bohdan
    Atlas of Protein Hydration.
    Internal code: webatlas_hydratace ; 2014
    Technical parameters: website, html, css, javascript, JSmol applet
    Economic parameters: typový projekt
    R&D Projects: GA ČR(CZ) GPP205/12/P729; GA MŠMT(CZ) ED1.1.00/02.0109
    Institutional support: RVO:86652036
    Keywords : protein hydration * structural biology * X-ray crystallography * Interaction energy * quantum chemistry
    Subject RIV: BO - Biophysics
    http://www.dnatco.org/atlas
    Permanent Link: http://hdl.handle.net/11104/0253227
     
     
  3. 3.
    0451955 - BTÚ 2016 RIV CZ eng L4 - Software
    Biedermannová, Lada
    Calculation of hydration sites of amino-acid conformers.
    Internal code: refine.sh ; 2014
    Technical parameters: BASH script, licence GPL 3
    Economic parameters: typový projekt
    R&D Projects: GA ČR(CZ) GPP205/12/P729; GA MŠMT(CZ) ED1.1.00/02.0109
    Institutional research plan: CEZ:AV0Z50520701
    Institutional support: RVO:86652036
    Keywords : protein hydration * structural biology * X-ray crystallography * hydration sites * density representation method
    Subject RIV: BO - Biophysics
    http://www.dnatco.org/atlas/refine/
    Permanent Link: http://hdl.handle.net/11104/0253011
     
     
  4. 4.
    0451604 - BTÚ 2016 RIV CZ eng L4 - Software
    Biedermannová, Lada
    Calculation of clusters of hydrated amino-acid conformers.
    Internal code: cluster.sh ; 2014
    Technical parameters: BASH script, licence GPL 3
    Economic parameters: typový projekt
    R&D Projects: GA ČR(CZ) GPP205/12/P729; GA MŠMT(CZ) ED1.1.00/02.0109
    Institutional research plan: CEZ:AV0Z50520701
    Institutional support: RVO:86652036
    Keywords : protein hydration * structural biology * X-ray crystallography, data mining * conformational clustering
    Subject RIV: BO - Biophysics
    http://www.dnatco.org/atlas/cluster/
    Permanent Link: http://hdl.handle.net/11104/0252788
     
     


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