Search results
- 1.0475942 - ÚOCHB 2018 RIV GB eng J - Journal Article
Šebera, Jakub - Hattori, Y. - Sato, D. - Řeha, David - Nencka, Radim - Kohno, T. - Kojima, C. - Tanaka, Y. - Sychrovský, Vladimír
The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine.
Nucleic Acids Research. Roč. 45, č. 9 (2017), s. 5231-5242. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : 8-oxoguanine * hOGG1 * QM/MM * NMR * base-excision repair
OECD category: Physical chemistry
Impact factor: 11.561, year: 2017
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkx157
Permanent Link: http://hdl.handle.net/11104/0272532 - 2.0466107 - ÚOCHB 2017 RIV NL eng J - Journal Article
Šebera, Jakub - Tanaka, Y. - Ono, A. - Sychrovský, Vladimír
The effect of chemical modification of DNA base on binding of Hg-II and Ag-I in metal-mediated base pairs.
Inorganica chimica acta. Roč. 452, Oct 1 (2016), s. 199-204. ISSN 0020-1693. E-ISSN 1873-3255
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963
Keywords : DFT * metal-mediated base pairs * Hg * Ag
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264505 - 3.0464723 - ÚOCHB 2017 RIV DE eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Kondo, J. - Yamanaka, D. - Kondo, Y. - Okamoto, I. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Structure Determination of an Ag-I-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with H-1/N-15/Ag-109 NMR Spectroscopy.
Chemistry - A European Journal. Roč. 22, č. 37 (2016), s. 13028-13031. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR GA13-27676S
Institutional support: RVO:61388963
Keywords : NMR * Ag * cytosine * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.317, year: 2016
Permanent Link: http://hdl.handle.net/11104/0263506 - 4.0458986 - ÚOCHB 2017 RIV NL eng J - Journal Article
Vavrinská, A. - Zelinka, J. - Šebera, Jakub - Sychrovský, Vladimír - Fiala, R. - Boelens, R. - Sklenář, V. - Trantírek, L.
Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.
Journal of Biomolecular NMR. Roč. 64, č. 1 (2016), s. 53-62. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GA13-27676S
Grant - others:AV ČR(CZ) M200551205
Institutional support: RVO:61388963
Keywords : NMR * DFT calculations * spin-spin interactions * magnetic field
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.410, year: 2016
http://link.springer.com/article/10.1007/s10858-015-0005-x
Permanent Link: http://hdl.handle.net/11104/0259189 - 5.0458784 - ÚOCHB 2017 RIV US eng J - Journal Article
Dračínský, Martin - Šála, Michal - Klepetářová, Blanka - Šebera, Jakub - Fukal, Jiří - Holečková, Veronika - Tanaka, Y. - Nencka, Radim - Sychrovský, Vladimír
Benchmark Theoretical and Experimental Study on N-15 NMR Shifts of Oxidatively Damaged Guanine.
Journal of Physical Chemistry B. Roč. 120, č. 5 (2016), s. 915-925. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR GA13-27676S; GA ČR GA15-11223S
Institutional support: RVO:61388963
Keywords : NMR spectroscopy * DFT calculations * oxidatively damaged guanine * hOGG1
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.177, year: 2016
Permanent Link: http://hdl.handle.net/11104/0259021 - 6.0435412 - ÚOCHB 2015 RIV GB eng J - Journal Article
Šebera, Jakub - Trantírek, L. - Tanaka, Y. - Nencka, Radim - Fukal, J. - Sychrovský, Vladimír
The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; Theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG.
RSC Advances. Roč. 4, č. 83 (2014), s. 44043-44051. E-ISSN 2046-2069
R&D Projects: GA ČR GA13-27676S
Grant - others:GA AV ČR(CZ) M200551205; GA MŠk(CZ) ED1.1.00/02.0068; GA MŠk(CZ) EE2.3.20.0042
Program: ED
Institutional support: RVO:61388963
Keywords : DFT * QM/MM * Fukui indices * hOGG1 * aromaticity * 8-OxoG
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.840, year: 2014
Permanent Link: http://hdl.handle.net/11104/0239675 - 7.0429733 - ÚOCHB 2015 RIV CZ eng J - Journal Article
Šebera, Jakub - Trantírek, L. - Fukal, J. - Tanaka, Y. - Sychrovský, Vladimír
Mechanism of base excision with the hOGG1 DNA repair enzyme.
Chemické listy. Roč. 108, č. 4 (2014), s. 364-367. ISSN 0009-2770. E-ISSN 1213-7103
R&D Projects: GA ČR GA13-27676S
Grant - others:CEITEC(XE) CZ.1.05/1.1.00/02.0068
Institutional support: RVO:61388963
Keywords : hOGG1 * base excision repair * theoretical modelling * N-pyramidalization
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 0.272, year: 2014
Permanent Link: http://hdl.handle.net/11104/0234803 - 8.0396365 - FZÚ 2014 RIV NL eng J - Journal Article
Kratochvílová, Irena - Vala, M. - Weiter, M. - Špérová, M. - Schneider, Bohdan - Páv, Ondřej - Šebera, Jakub - Rosenberg, Ivan - Sychrovský, Vladimír
Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: complex theoretical and experimental studies.
Biophysical Chemistry. 180-181, Oct-Nov (2013), s. 127-134. ISSN 0301-4622. E-ISSN 1873-4200
R&D Projects: GA TA ČR TA01011165; GA ČR(CZ) GAP304/10/1951; GA ČR GA13-27676S; GA ČR GA202/09/0193
Institutional support: RVO:68378271 ; RVO:86652036 ; RVO:61388963
Keywords : charge transfer in oligonucleotides * temperature dependent steady state fluorescence spectroscopy * time-resolved fluorescence spectroscopy
Subject RIV: JJ - Other Materials; CC - Organic Chemistry (UOCHB-X)
Impact factor: 2.319, year: 2013
Permanent Link: http://hdl.handle.net/11104/0224170