Search results
- 1.0524333 - MBÚ 2020 RIV US eng J - Journal Article
Šiková, Michaela - Wiedermannová, Jana - Převorovský, M. - Barvík, I. - Sudzinová, Petra - Kofroňová, Olga - Benada, Oldřich - Šanderová, Hana - Condon, C. - Krásný, Libor
The torpedo effect in Bacillus subtilis: RNase J1 resolves stalled transcription complexes.
EMBO Journal. Roč. 39, č. 3 (2020), č. článku e102500. ISSN 0261-4189. E-ISSN 1460-2075
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA ČR(CZ) GA19-12956S; GA MŠMT(CZ) LM2015055; GA MŠMT(CZ) LM2015062; GA MŠMT(CZ) LO1509
Institutional support: RVO:61388971
Keywords : RNAP * RNase J1 * torpedo
OECD category: Microbiology
Impact factor: 11.598, year: 2020
Method of publishing: Open access
https://www.embopress.org/doi/abs/10.15252/embj.2019102500
Permanent Link: http://hdl.handle.net/11104/0308703 - 2.0521827 - ÚMG 2020 RIV US eng J - Journal Article
Demeter, Tomáš - Vaškovicová, Michaela - Malík, Radek - Horvat, Filip - Pasulka, Josef - Svobodová, Eliška - Flemr, Matyáš - Svoboda, Petr
Main Constraints for RNAi Induced by Expressed Long dsRNA in Mouse Cells.
Life Science Alliance. Roč. 2, č. 1 (2019), č. článku e201800289. E-ISSN 2575-1077
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA MŠMT LO1419
Grant - others:GA MŠk(CZ) LM2015042
Institutional support: RVO:68378050
Keywords : RNAi * dsRNA * Dicer
OECD category: Biochemistry and molecular biology
Impact factor: 2.622, year: 2019
Method of publishing: Open access
https://www.life-science-alliance.org/content/2/1/e201800289
Permanent Link: http://hdl.handle.net/11104/0306388File Download Size Commentary Version Access Life_Science_Alliance_T_Demeter_2019.pdf 3 2.1 MB Publisher’s postprint require - 3.0504361 - MBÚ 2020 RIV US eng J - Journal Article
Šiková, Michaela - Janoušková, Martina - Ramaniuk, Olga - Páleníková, Petra - Pospíšil, Jiří - Bartl, P. - Suder, Agnieszka - Pajer, P. - Kubičková, P. - Pavliš, O. - Hradilová, Miluše - Vítovská, Dragana - Šanderová, Hana - Převorovský, M. - Hnilicová, Jarmila - Krásný, Libor
Ms1 RNA increases the amount of RNA polymerase in Mycobacterium smegmatis.
Molecular Microbiology. Roč. 111, č. 2 (2019), s. 354-372. ISSN 0950-382X. E-ISSN 1365-2958
R&D Projects: GA ČR GP13-27150P; GA ČR(CZ) GBP305/12/G034
Institutional support: RVO:61388971 ; RVO:68378050
Keywords : 6s rna * escherichia-coli * polynucleotide phosphorylase
OECD category: Microbiology
Impact factor: 3.418, year: 2019
Method of publishing: Limited access
https://onlinelibrary.wiley.com/doi/abs/10.1111/mmi.14159
Permanent Link: http://hdl.handle.net/11104/0296014 - 4.0502832 - BFÚ 2019 RIV US eng J - Journal Article
Ripin, N. - Boudet, J. - Duszczyk, M.M. - Hinniger, A. - Faller, M. - Krepl, Miroslav - Gadi, A. - Schneider, R.J. - Šponer, Jiří - Meisner-Kober, N.C. - Allain, F.H.T.
Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 116, č. 8 (2019), s. 2935-2944. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional support: RVO:68081707
Keywords : rna-binding protein * messenger-rna * structural basis * motif
OECD category: Biochemistry and molecular biology
Impact factor: 9.412, year: 2019
Method of publishing: Open access
https://www.pnas.org/content/pnas/116/8/2935.full.pdf
Permanent Link: http://hdl.handle.net/11104/0294719 - 5.0502400 - BFÚ 2019 RIV US eng J - Journal Article
Pokorná, Pavlína - Kruse, Holger - Krepl, Miroslav - Šponer, Jiří
QM/MM Calculations on Protein-RNA Complexes: Understanding Limitations of Classical MD Simulations and Search for Reliable Cost-Effective QM Methods.
Journal of Chemical Theory and Computation. Roč. 14, č. 10 (2018), s. 5419-5433. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : small nuclear ribonucleoprotein * molecular-dynamics simulations * density-functional theory * l-histidine ligand
OECD category: Physical chemistry
Impact factor: 5.313, year: 2018
Permanent Link: http://hdl.handle.net/11104/0294336 - 6.0501796 - ÚMG 2019 RIV US eng J - Journal Article
Horvat, Filip - Fulka, Helena - Jankele, R. - Malík, Radek - Jun, M. - Šolcová, Kateřina - Sedláček, Radislav - Vlahovicek, K. - Schultz, R. M. - Svoboda, Petr
Role of Cnot6l in maternal mRNA turnover.
Life Science Alliance. Roč. 1, č. 4 (2018), č. článku e201800084. E-ISSN 2575-1077
R&D Projects: GA MŠMT LO1419; GA MŠMT(CZ) LM2015040; GA ČR(CZ) GBP305/12/G034; GA MŠMT ED2.1.00/19.0395
Institutional support: RVO:68378050
Keywords : ccr4-not complex * deadenylation * transcriptome * programs * embryos
OECD category: Reproductive biology (medical aspects to be 3)
Permanent Link: http://hdl.handle.net/11104/0294065 - 7.0501653 - BFÚ 2019 RIV US eng J - Journal Article
Bochicchio, A. - Krepl, Miroslav - Yang, F. - Varani, G. - Šponer, Jiří - Carloni, P.
Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study.
PLoS Computational Biology. Roč. 14, č. 12 (2018), č. článku e1006642. ISSN 1553-734X. E-ISSN 1553-7358
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional support: RVO:68081707
Keywords : hamiltonian replica exchange * protein-structure * swiss-model * binding
OECD category: Biochemistry and molecular biology
Impact factor: 4.428, year: 2018
Permanent Link: http://hdl.handle.net/11104/0293645 - 8.0497061 - ÚMG 2020 RIV GB eng J - Journal Article
Krchňáková, Eva - Thakur, Prasoon-Kumar - Krausová, Michaela - Bieberstein, Nicole - Haberman, N. - Muller-McNicoll, M. - Staněk, David
Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5' splice-site sequences due to weak interactions with SR proteins.
Nucleic Acids Research. Roč. 47, č. 2 (2019), s. 911-928. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GBP305/12/G034; GA MŠMT LO1419; GA AV ČR L200521652
Institutional support: RVO:68378050
Keywords : Pre-messenger-rna * Alternative exon * Gene-expression * Human genome * Transcriptome
OECD category: Biochemistry and molecular biology
Impact factor: 11.502, year: 2019
Method of publishing: Open access
https://academic.oup.com/nar/article/47/2/911/5184724
Permanent Link: http://hdl.handle.net/11104/0289661File Download Size Commentary Version Access Nucleic_Acids_Research_Z_Krchnakova_2019.pdf 4 2.4 MB Author´s preprint require - 9.0497047 - ÚMG 2019 RIV GB eng J - Journal Article
Kralovicova, J. - Sevcikova, I. - Stejskalová, Eva - Obuca, Mina - Hiller, M. - Staněk, David - Vorechovsky, I.
PUF60-activated exons uncover altered 3 ' splice-site selection by germline missense mutations in a single RRM.
Nucleic Acids Research. Roč. 46, č. 12 (2018), s. 6166-6187. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional support: RVO:68378050
Keywords : rna-binding proteins * genome-wide analysis * u2af homology motif * large gene lists * hepatocellular-carcinoma * intron definition * glucosidase ii * liver-disease * branch point * caper-alpha
OECD category: Biochemistry and molecular biology
Impact factor: 11.147, year: 2018
Permanent Link: http://hdl.handle.net/11104/0289651 - 10.0496494 - MBÚ 2019 RIV US eng J - Journal Article
Sýkora, M. - Pospíšek, M. - Novák, J. - Mrvová, S. - Krásný, Libor - Vopálenský, V.
Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin.
PLoS Pathogens. Roč. 14, č. 10 (2018), č. článku e1007377. ISSN 1553-7366. E-ISSN 1553-7374
R&D Projects: GA ČR(CZ) GBP305/12/G034
Institutional support: RVO:61388971
Keywords : DNA KILLER PLASMIDS * RNA-POLYMERASE-II * EARLY MESSENGER-RNAS
OECD category: Microbiology
Impact factor: 6.463, year: 2018
Permanent Link: http://hdl.handle.net/11104/0289262