Search results
- 1.0599397 - ÚVGZ 2025 RIV US eng J - Journal Article
Pfennig, T. - Kullmann, E. - Zavřel, Tomáš - Nakielski, A. - Ebenhoeh, O. - Červený, Jan - Bernát, G. - Matuszynska, A. B.
Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in iSynechocystis/i sp. PCC 6803.
PLoS Computational Biology. Roč. 20, č. 9 (2024), č. článku e1012445. ISSN 1553-734X. E-ISSN 1553-7358
R&D Projects: GA MŠMT(CZ) LM2018123; GA MŠMT(CZ) EF16_026/0008413; GA MŠMT(CZ) LUAUS24149
Institutional support: RVO:86652079
Keywords : orange carotenoid protein * electron-transport * cyanobacteria * quality * energy * transitions * pathways * pcc-6803 * co2
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 3.8, year: 2023 ; AIS: 1.835, rok: 2023
Method of publishing: Open access
Result website:
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012445DOI: https://doi.org/10.1371/journal.pcbi.1012445
Permanent Link: https://hdl.handle.net/11104/0356867File Download Size Commentary Version Access Shedding light on blue-green photosynthesis_A wavelength-dependent mathematical model of photosynthesis in.pdf 0 2.9 MB Publisher’s postprint open-access - 2.0599393 - ÚVGZ 2025 RIV US eng J - Journal Article
Höper, D. - Komkova, D. - Zavřel, Tomáš - Steuer, R.
A quantitative description of light-limited cyanobacterial growth using flux balance analysis.
PLoS Computational Biology. Roč. 20, AUG (2024), č. článku e1012280. ISSN 1553-734X. E-ISSN 1553-7358
Institutional support: RVO:86652079
Keywords : Computational Biology * Cyanobacteria * Metabolic Flux Analysis * photosynthesis * light
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 3.8, year: 2023 ; AIS: 1.835, rok: 2023
Method of publishing: Open access
Result website:
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012280DOI: https://doi.org/10.1371/journal.pcbi.1012280
Permanent Link: https://hdl.handle.net/11104/0356865File Download Size Commentary Version Access A quantitative description of light-limited cyanobacterial growth using flux balance analysis.pdf 0 2.5 MB Publisher’s postprint open-access - 3.0586974 - ÚVGZ 2025 RIV CH eng J - Journal Article
Literáková, Petra - Zavřel, Tomáš - Búzová, Diana - Kaštánek, P. - Červený, Jan
Marine microalgae Schizochytrium demonstrates strong production of essential fatty acids in various cultivation conditions, advancing dietary self-sufficiency.
Frontiers in Nutrition. Roč. 11, MAY (2024), č. článku 1290701. ISSN 2296-861X. E-ISSN 2296-861X
R&D Projects: GA MŠMT(CZ) EF16_026/0008413; GA TA ČR(CZ) TN02000044
Institutional support: RVO:86652079
Keywords : docosahexaenoic acid * limacinum * glycerol * omega-3 * model * water * dha * docosahexaenoic acid * unicellular eukaryote * growth * optimization * health supplements * bioreactors * process automation
OECD category: Biochemistry and molecular biology
Impact factor: 4, year: 2023 ; AIS: 0.832, rok: 2023
Method of publishing: Open access
Result website:
https://www.frontiersin.org/articles/10.3389/fnut.2024.1290701/fullDOI: https://doi.org/10.3389/fnut.2024.1290701
Permanent Link: https://hdl.handle.net/11104/0354330File Download Size Commentary Version Access fnut-11-1290701.pdf 0 1.5 MB Publisher’s postprint open-access - 4.0580096 - ÚVGZ 2025 RIV US eng J - Journal Article
Espinoza-Corral, R. - Iwai, M. - Zavřel, Tomáš - Lechno-Yossef, S. - Sutter, M. - Červený, Jan - Niyogi, K. K. - Kerfeld, C.A.
Phycobilisome protein ApcG interacts with PSII and regulates energy transfer in Synechocystis.
Plant Physiology. Roč. 194, č. 3 (2024), s. 1383-1396. ISSN 0032-0889. E-ISSN 1532-2548
Institutional support: RVO:86652079
Keywords : sp pcc 6803 * state transition * excitation-energy * light * chlorophyll * expression * model * photosynthesis * fluorescence * ultrastructure
OECD category: Plant sciences, botany
Impact factor: 6.6, year: 2023 ; AIS: 1.894, rok: 2023
Method of publishing: Limited access
Result website:
https://academic.oup.com/plphys/advance-article/doi/10.1093/plphys/kiad615/7424862?login=trueDOI: https://doi.org/10.1093/plphys/kiad615
Permanent Link: https://hdl.handle.net/11104/0353074 - 5.0577721 - ÚVGZ 2024 RIV NL eng J - Journal Article
Sukačová, Kateřina - Szotkowski, M. - Pařil, P. - Mareš, J. - Touš, M. - Vícha, Daniel - Polášek, M. - Márová, I. - Zavřel, Tomáš
Simultaneous production of γ-linolenic acid and carotenoids by a novel microalgal strain isolated from the underexplored habitat of intermittent streams.
Algal Research-Biomass Biofuels and Bioproducts. Roč. 71, APR (2023), č. článku 103055. ISSN 2211-9264. E-ISSN 2211-9264
R&D Projects: GA MŠMT(CZ) EF16_026/0008413
Research Infrastructure: CzeCOS IV - 90248
Institutional support: RVO:86652079
Keywords : microalgae * pseudomuriella engadinensis * essential fatty acids * γ-linolenic acid * lutein
OECD category: Microbiology
Impact factor: 4.6, year: 2023 ; AIS: 0.771, rok: 2023
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S2211926423000887?via%3DihubDOI: https://doi.org/10.1016/j.algal.2023.103055
Permanent Link: https://hdl.handle.net/11104/0346840 - 6.0572613 - MBÚ 2024 RIV NL eng J - Journal Article
Rodrigues, J. S. - Kovács, L. - Lukeš, Martin - Hoper, R. - Steuer, R. - Červený, Jan - Lindberg, P. - Zavřel, Tomáš
Characterizing isoprene production in cyanobacteria-Insights into the effects of light, temperature, and isoprene on Synechocystis sp. PCC 6803.
Bioresource Technology. Roč. 380, JUL 2023 (2023), č. článku 129068. ISSN 0960-8524. E-ISSN 1873-2976
R&D Projects: GA MŠMT(CZ) EF16_026/0008413
Research Infrastructure: CzeCOS IV - 90248
Institutional support: RVO:61388971 ; RVO:86652079
Keywords : Biofuels * Cultivation conditions * Optimization * Thermotolerance * Flux Balance Analysis
OECD category: Microbiology; Microbiology (UEK-B)
Impact factor: 9.7, year: 2023 ; AIS: 1.335, rok: 2023
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S0960852423004947?via%3DihubDOI: https://doi.org/10.1016/j.biortech.2023.129068
Permanent Link: https://hdl.handle.net/11104/0347180File Download Size Commentary Version Access 1-s2.0-S0960852423004947-main.pdf 1 2.5 MB Publisher’s postprint require - 7.0550181 - MBÚ 2022 RIV NL eng J - Journal Article
Inomura, K. - Masuda, Takako - Eichner, Meri - Rabouille, S. - Zavřel, Tomáš - Červený, Jan - Vancová, Marie - Bernát, Gábor - Armin, G. - Claquin, P. - Kotabová, Eva - Stephan, S. - Suggett, D.J. - Deutsch, C. - Prášil, Ondřej
Quantifying Cyanothece growth under DIC limitation.
Computational and Structural Biotechnology Journal. Roč. 19, č. 2021 (2021), s. 6456-6464. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-17627S; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) LM2018129
Research Infrastructure: Czech-BioImaging II - 90129
Institutional support: RVO:61388971 ; RVO:86652079 ; RVO:60077344
Keywords : Cyanothece * DIC * CO2 * Nitrogen fixation * Nitrate * Diurnal Cyanothece * Carbon * Photosynthesis * Quantitative model
OECD category: Microbiology; Microbiology (UEK-B); Cell biology (BC-A)
Impact factor: 6.155, year: 2021 ; AIS: 1.475, rok: 2021
Method of publishing: Open access
Result website:
https://www.sciencedirect.com/science/article/pii/S2001037021005018?via%3DihubDOI: https://doi.org/10.1016/j.csbj.2021.11.036
Permanent Link: http://hdl.handle.net/11104/0325969 - 8.0550065 - MBÚ 2022 RIV CH eng J - Journal Article
Polerecky, L. - Eichner, Meri - Masuda, Takako - Zavřel, Tomáš - Rabouille, S. - Campbell, D. A. - Halsey, K.
Calculation and Interpretation of Substrate Assimilation Rates in Microbial Cells Based on Isotopic Composition Data Obtained by nanoSIMS.
Frontiers in Microbiology. Roč. 12, NOV 30 2021 (2021), č. článku 621634. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GA20-17627S; GA ČR(CZ) GJ20-02827Y; GA MŠMT(CZ) EF16_026/0008413; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) EF16_027/0007990
Institutional support: RVO:61388971 ; RVO:86652079
Keywords : stable isotope probing * assimilation rates * storage inclusions * cell growth model
OECD category: Microbiology
Impact factor: 6.064, year: 2021 ; AIS: 1.255, rok: 2021
Method of publishing: Open access
Result website:
https://hal.archives-ouvertes.fr/hal-03469894/DOI: https://doi.org/10.3389/fmicb.2021.621634
Permanent Link: http://hdl.handle.net/11104/0325915 - 9.0543490 - ÚVGZ 2022 RIV NL eng J - Journal Article
Zavřel, Tomáš - Schoffman, H. - Lukeš, Martin - Fedorko, Jan - Keren, N. - Červený, Jan
Monitoring fitness and productivity in cyanobacteria batch cultures.
Algal Research-Biomass Biofuels and Bioproducts. Roč. 56, JUN (2021), č. článku 102328. ISSN 2211-9264. E-ISSN 2211-9264
R&D Projects: GA MŠMT(CZ) LO1415; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) EF16_026/0008413; GA TA ČR(CZ) TN01000048
Research Infrastructure: CzeCOS III - 90123
Institutional support: RVO:86652079 ; RVO:61388971
Keywords : sp pcc 6803 * photosystem-ii * microalgae cultivation * dark respiration * growth-rate * light * phytoplankton * photosynthesis * fluorescence * algae * Batch cultivation * Cyanobacteria * Excitation-emission spectra * Fitness * Metal uptake * Photosynthesis
OECD category: Microbiology; Microbiology (MBU-M)
Impact factor: 5.276, year: 2021 ; AIS: 0.764, rok: 2021
Method of publishing: Limited access
Result website:
https://www.sciencedirect.com/science/article/pii/S2211926421001478?via%3DihubDOI: https://doi.org/10.1016/j.algal.2021.102328
Permanent Link: http://hdl.handle.net/11104/0320687 - 10.0542698 - MBÚ 2022 RIV CH eng J - Journal Article
Rabouille, S. - Campbell, Douglas Andrew - Masuda, Takako - Zavřel, Tomáš - Bernát, Gábor - Polerecky, L. - Halsey, K. - Eichner, Meri - Kotabová, Eva - Stephan, S. - Lukeš, Martin - Claquin, P. - Bonomi-Barufi, J. - Lombardi, A. T. - Červený, Jan - Suggett, D. - Giordano, Mario - Kromkamp, J. C. - Prášil, Ondřej
Electron & Biomass Dynamics of Cyanothece Under Interacting Nitrogen & Carbon Limitations.
Frontiers in Microbiology. Roč. 12, APR 9 2021 (2021), č. článku 617802. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA MŠMT(CZ) EF16_027/0007990; GA ČR(CZ) GA20-17627S; GA MŠMT(CZ) EF16_026/0008413; GA ČR(CZ) GA19-00973S
Institutional support: RVO:61388971 ; RVO:86652079
Keywords : Cyanothece * Crocosphaera subtropica * photosynthesis * light limitation * carbon limitation * nitrogen fixation
OECD category: Microbiology; Plant sciences, botany (UEK-B)
Impact factor: 6.064, year: 2021 ; AIS: 1.255, rok: 2021
Method of publishing: Open access
Result website:
https://www.frontiersin.org/articles/10.3389/fmicb.2021.617802/fullDOI: https://doi.org/10.3389/fmicb.2021.617802
Permanent Link: http://hdl.handle.net/11104/0320072