Search results

  1. 1.
    0599397 - ÚVGZ 2025 RIV US eng J - Journal Article
    Pfennig, T. - Kullmann, E. - Zavřel, Tomáš - Nakielski, A. - Ebenhoeh, O. - Červený, Jan - Bernát, G. - Matuszynska, A. B.
    Shedding light on blue-green photosynthesis: A wavelength-dependent mathematical model of photosynthesis in iSynechocystis/i sp. PCC 6803.
    PLoS Computational Biology. Roč. 20, č. 9 (2024), č. článku e1012445. ISSN 1553-734X. E-ISSN 1553-7358
    R&D Projects: GA MŠMT(CZ) LM2018123; GA MŠMT(CZ) EF16_026/0008413; GA MŠMT(CZ) LUAUS24149
    Institutional support: RVO:86652079
    Keywords : orange carotenoid protein * electron-transport * cyanobacteria * quality * energy * transitions * pathways * pcc-6803 * co2
    OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
    Impact factor: 3.8, year: 2023 ; AIS: 1.835, rok: 2023
    Method of publishing: Open access
    Result website:
    https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012445DOI: https://doi.org/10.1371/journal.pcbi.1012445
    Permanent Link: https://hdl.handle.net/11104/0356867
     
     
  2. 2.
    0599393 - ÚVGZ 2025 RIV US eng J - Journal Article
    Höper, D. - Komkova, D. - Zavřel, Tomáš - Steuer, R.
    A quantitative description of light-limited cyanobacterial growth using flux balance analysis.
    PLoS Computational Biology. Roč. 20, AUG (2024), č. článku e1012280. ISSN 1553-734X. E-ISSN 1553-7358
    Institutional support: RVO:86652079
    Keywords : Computational Biology * Cyanobacteria * Metabolic Flux Analysis * photosynthesis * light
    OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
    Impact factor: 3.8, year: 2023 ; AIS: 1.835, rok: 2023
    Method of publishing: Open access
    Result website:
    https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012280DOI: https://doi.org/10.1371/journal.pcbi.1012280
    Permanent Link: https://hdl.handle.net/11104/0356865
     
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    A quantitative description of light-limited cyanobacterial growth using flux balance analysis.pdf02.5 MBPublisher’s postprintopen-access
     
  3. 3.
    0586974 - ÚVGZ 2025 RIV CH eng J - Journal Article
    Literáková, Petra - Zavřel, Tomáš - Búzová, Diana - Kaštánek, P. - Červený, Jan
    Marine microalgae Schizochytrium demonstrates strong production of essential fatty acids in various cultivation conditions, advancing dietary self-sufficiency.
    Frontiers in Nutrition. Roč. 11, MAY (2024), č. článku 1290701. ISSN 2296-861X. E-ISSN 2296-861X
    R&D Projects: GA MŠMT(CZ) EF16_026/0008413; GA TA ČR(CZ) TN02000044
    Institutional support: RVO:86652079
    Keywords : docosahexaenoic acid * limacinum * glycerol * omega-3 * model * water * dha * docosahexaenoic acid * unicellular eukaryote * growth * optimization * health supplements * bioreactors * process automation
    OECD category: Biochemistry and molecular biology
    Impact factor: 4, year: 2023 ; AIS: 0.832, rok: 2023
    Method of publishing: Open access
    Result website:
    https://www.frontiersin.org/articles/10.3389/fnut.2024.1290701/fullDOI: https://doi.org/10.3389/fnut.2024.1290701
    Permanent Link: https://hdl.handle.net/11104/0354330
     
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    fnut-11-1290701.pdf01.5 MBPublisher’s postprintopen-access
     
  4. 4.
    0580096 - ÚVGZ 2025 RIV US eng J - Journal Article
    Espinoza-Corral, R. - Iwai, M. - Zavřel, Tomáš - Lechno-Yossef, S. - Sutter, M. - Červený, Jan - Niyogi, K. K. - Kerfeld, C.A.
    Phycobilisome protein ApcG interacts with PSII and regulates energy transfer in Synechocystis.
    Plant Physiology. Roč. 194, č. 3 (2024), s. 1383-1396. ISSN 0032-0889. E-ISSN 1532-2548
    Institutional support: RVO:86652079
    Keywords : sp pcc 6803 * state transition * excitation-energy * light * chlorophyll * expression * model * photosynthesis * fluorescence * ultrastructure
    OECD category: Plant sciences, botany
    Impact factor: 6.6, year: 2023 ; AIS: 1.894, rok: 2023
    Method of publishing: Limited access
    Result website:
    https://academic.oup.com/plphys/advance-article/doi/10.1093/plphys/kiad615/7424862?login=trueDOI: https://doi.org/10.1093/plphys/kiad615
    Permanent Link: https://hdl.handle.net/11104/0353074
     
     
  5. 5.
    0577721 - ÚVGZ 2024 RIV NL eng J - Journal Article
    Sukačová, Kateřina - Szotkowski, M. - Pařil, P. - Mareš, J. - Touš, M. - Vícha, Daniel - Polášek, M. - Márová, I. - Zavřel, Tomáš
    Simultaneous production of γ-linolenic acid and carotenoids by a novel microalgal strain isolated from the underexplored habitat of intermittent streams.
    Algal Research-Biomass Biofuels and Bioproducts. Roč. 71, APR (2023), č. článku 103055. ISSN 2211-9264. E-ISSN 2211-9264
    R&D Projects: GA MŠMT(CZ) EF16_026/0008413
    Research Infrastructure: CzeCOS IV - 90248
    Institutional support: RVO:86652079
    Keywords : microalgae * pseudomuriella engadinensis * essential fatty acids * γ-linolenic acid * lutein
    OECD category: Microbiology
    Impact factor: 4.6, year: 2023 ; AIS: 0.771, rok: 2023
    Method of publishing: Limited access
    Result website:
    https://www.sciencedirect.com/science/article/pii/S2211926423000887?via%3DihubDOI: https://doi.org/10.1016/j.algal.2023.103055
    Permanent Link: https://hdl.handle.net/11104/0346840
     
     
  6. 6.
    0572613 - MBÚ 2024 RIV NL eng J - Journal Article
    Rodrigues, J. S. - Kovács, L. - Lukeš, Martin - Hoper, R. - Steuer, R. - Červený, Jan - Lindberg, P. - Zavřel, Tomáš
    Characterizing isoprene production in cyanobacteria-Insights into the effects of light, temperature, and isoprene on Synechocystis sp. PCC 6803.
    Bioresource Technology. Roč. 380, JUL 2023 (2023), č. článku 129068. ISSN 0960-8524. E-ISSN 1873-2976
    R&D Projects: GA MŠMT(CZ) EF16_026/0008413
    Research Infrastructure: CzeCOS IV - 90248
    Institutional support: RVO:61388971 ; RVO:86652079
    Keywords : Biofuels * Cultivation conditions * Optimization * Thermotolerance * Flux Balance Analysis
    OECD category: Microbiology; Microbiology (UEK-B)
    Impact factor: 9.7, year: 2023 ; AIS: 1.335, rok: 2023
    Method of publishing: Limited access
    Result website:
    https://www.sciencedirect.com/science/article/pii/S0960852423004947?via%3DihubDOI: https://doi.org/10.1016/j.biortech.2023.129068
    Permanent Link: https://hdl.handle.net/11104/0347180
     
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    1-s2.0-S0960852423004947-main.pdf12.5 MBPublisher’s postprintrequire
     
  7. 7.
    0550181 - MBÚ 2022 RIV NL eng J - Journal Article
    Inomura, K. - Masuda, Takako - Eichner, Meri - Rabouille, S. - Zavřel, Tomáš - Červený, Jan - Vancová, Marie - Bernát, Gábor - Armin, G. - Claquin, P. - Kotabová, Eva - Stephan, S. - Suggett, D.J. - Deutsch, C. - Prášil, Ondřej
    Quantifying Cyanothece growth under DIC limitation.
    Computational and Structural Biotechnology Journal. Roč. 19, č. 2021 (2021), s. 6456-6464. ISSN 2001-0370. E-ISSN 2001-0370
    R&D Projects: GA ČR(CZ) GA20-17627S; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) LM2018129
    Research Infrastructure: Czech-BioImaging II - 90129
    Institutional support: RVO:61388971 ; RVO:86652079 ; RVO:60077344
    Keywords : Cyanothece * DIC * CO2 * Nitrogen fixation * Nitrate * Diurnal Cyanothece * Carbon * Photosynthesis * Quantitative model
    OECD category: Microbiology; Microbiology (UEK-B); Cell biology (BC-A)
    Impact factor: 6.155, year: 2021 ; AIS: 1.475, rok: 2021
    Method of publishing: Open access
    Result website:
    https://www.sciencedirect.com/science/article/pii/S2001037021005018?via%3DihubDOI: https://doi.org/10.1016/j.csbj.2021.11.036
    Permanent Link: http://hdl.handle.net/11104/0325969
     
  8. 8.
    0550065 - MBÚ 2022 RIV CH eng J - Journal Article
    Polerecky, L. - Eichner, Meri - Masuda, Takako - Zavřel, Tomáš - Rabouille, S. - Campbell, D. A. - Halsey, K.
    Calculation and Interpretation of Substrate Assimilation Rates in Microbial Cells Based on Isotopic Composition Data Obtained by nanoSIMS.
    Frontiers in Microbiology. Roč. 12, NOV 30 2021 (2021), č. článku 621634. ISSN 1664-302X. E-ISSN 1664-302X
    R&D Projects: GA ČR(CZ) GA20-17627S; GA ČR(CZ) GJ20-02827Y; GA MŠMT(CZ) EF16_026/0008413; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) EF16_027/0007990
    Institutional support: RVO:61388971 ; RVO:86652079
    Keywords : stable isotope probing * assimilation rates * storage inclusions * cell growth model
    OECD category: Microbiology
    Impact factor: 6.064, year: 2021 ; AIS: 1.255, rok: 2021
    Method of publishing: Open access
    Result website:
    https://hal.archives-ouvertes.fr/hal-03469894/DOI: https://doi.org/10.3389/fmicb.2021.621634
    Permanent Link: http://hdl.handle.net/11104/0325915
     
  9. 9.
    0543490 - ÚVGZ 2022 RIV NL eng J - Journal Article
    Zavřel, Tomáš - Schoffman, H. - Lukeš, Martin - Fedorko, Jan - Keren, N. - Červený, Jan
    Monitoring fitness and productivity in cyanobacteria batch cultures.
    Algal Research-Biomass Biofuels and Bioproducts. Roč. 56, JUN (2021), č. článku 102328. ISSN 2211-9264. E-ISSN 2211-9264
    R&D Projects: GA MŠMT(CZ) LO1415; GA ČR(CZ) GA18-24397S; GA MŠMT(CZ) EF16_026/0008413; GA TA ČR(CZ) TN01000048
    Research Infrastructure: CzeCOS III - 90123
    Institutional support: RVO:86652079 ; RVO:61388971
    Keywords : sp pcc 6803 * photosystem-ii * microalgae cultivation * dark respiration * growth-rate * light * phytoplankton * photosynthesis * fluorescence * algae * Batch cultivation * Cyanobacteria * Excitation-emission spectra * Fitness * Metal uptake * Photosynthesis
    OECD category: Microbiology; Microbiology (MBU-M)
    Impact factor: 5.276, year: 2021 ; AIS: 0.764, rok: 2021
    Method of publishing: Limited access
    Result website:
    https://www.sciencedirect.com/science/article/pii/S2211926421001478?via%3DihubDOI: https://doi.org/10.1016/j.algal.2021.102328
    Permanent Link: http://hdl.handle.net/11104/0320687
     
     
  10. 10.
    0542698 - MBÚ 2022 RIV CH eng J - Journal Article
    Rabouille, S. - Campbell, Douglas Andrew - Masuda, Takako - Zavřel, Tomáš - Bernát, Gábor - Polerecky, L. - Halsey, K. - Eichner, Meri - Kotabová, Eva - Stephan, S. - Lukeš, Martin - Claquin, P. - Bonomi-Barufi, J. - Lombardi, A. T. - Červený, Jan - Suggett, D. - Giordano, Mario - Kromkamp, J. C. - Prášil, Ondřej
    Electron & Biomass Dynamics of Cyanothece Under Interacting Nitrogen & Carbon Limitations.
    Frontiers in Microbiology. Roč. 12, APR 9 2021 (2021), č. článku 617802. ISSN 1664-302X. E-ISSN 1664-302X
    R&D Projects: GA MŠMT(CZ) EF16_027/0007990; GA ČR(CZ) GA20-17627S; GA MŠMT(CZ) EF16_026/0008413; GA ČR(CZ) GA19-00973S
    Institutional support: RVO:61388971 ; RVO:86652079
    Keywords : Cyanothece * Crocosphaera subtropica * photosynthesis * light limitation * carbon limitation * nitrogen fixation
    OECD category: Microbiology; Plant sciences, botany (UEK-B)
    Impact factor: 6.064, year: 2021 ; AIS: 1.255, rok: 2021
    Method of publishing: Open access
    Result website:
    https://www.frontiersin.org/articles/10.3389/fmicb.2021.617802/fullDOI: https://doi.org/10.3389/fmicb.2021.617802
    Permanent Link: http://hdl.handle.net/11104/0320072
     
     

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