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  1. 1.
    0618968 - ÚFCH JH 2026 RIV US eng J - Journal Article
    Kukulka, M. - Pem, B. - Vazdar, Katarina - Cwiklik, Lukasz - Vazdar, M.
    UV Absorption Spectra of TAMRA and TAMRA Labeled Peptides: A Combined Density Functional Theory and Classical Molecular Dynamics Study.
    Journal of Computational Chemistry. Roč. 46, č. 8 (2025), č. článku e70096. ISSN 0192-8651. E-ISSN 1096-987X
    R&D Projects: GA ČR GF22-27317K
    Grant - others:EU-COST(XE) CA21169
    Research Infrastructure: e-INFRA CZ II - 90254
    Institutional support: RVO:61388955
    Keywords : gaussian-basis sets * correlation-energy * orbital methods * approximation * fluorescent probes * molecular dynamics simulations * time-dependent density functional theory * UV absorption spectra
    OECD category: Physical chemistry
    Impact factor: 3.4, year: 2023 ; AIS: 0.844, rok: 2023
    Method of publishing: Open access
    DOI: https://doi.org/10.1002/jcc.70096
    Permanent Link: https://hdl.handle.net/11104/0365767
     
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    0618968.pdf02.2 MBopen accessPublisher’s postprintopen-access
     
  2. 2.
    0604452 - ÚOCHB 2026 RIV US eng J - Journal Article
    Brzobohatá, H. - Dugić, M. - Mojr, Viktor - Sahatsapan, Nitjawan - Kóšiová, Ivana - Křížek, T. - Dolejšová, T. - Lišková, P. - Cwiklik, Lukasz - Rejman, Dominik - Fišer, R. - Mikušová, G.
    LEGO-Lipophosphonoxin membrane activity is enhanced by presence of phosphatidylethanolamine but hindered by outer membrane.
    Scientific Reports. Roč. 15, January (2025), č. článku 1206. ISSN 2045-2322. E-ISSN 2045-2322
    R&D Projects: GA MŠMT(CZ) LX22NPO5103; GA ČR(CZ) GA22-08857S
    Institutional support: RVO:61388963 ; RVO:61388955
    Keywords : antimicrobial compound * lipophosphonoxine * membrane
    OECD category: Organic chemistry
    Impact factor: 3.8, year: 2023 ; AIS: 1.061, rok: 2023
    Method of publishing: Open access
    Result website:
    https://doi.org/10.1038/s41598-024-83205-wDOI: https://doi.org/10.1038/s41598-024-83205-w
    Permanent Link: https://hdl.handle.net/11104/0361844
     
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    10.1038s41598-024-83205-w.pdf33.8 MBPublisher’s postprintopen-access
     
  3. 3.
    0600353 - ÚOCHB 2026 RIV US eng J - Journal Article
    Dolejšová, T. - Lišková, P. - Sahatsapan, Nitjawan - Mojr, Viktor - Pohl, Radek - Brzobohatá, H. - Dugić, M. - Křížek, T. - Cwiklik, Lukasz - Mikušová, G. - Rejman, Dominik - Fišer, R.
    Naphthylated LEGO-lipophosphonoxin antibiotics used as a fluorescent tool for the observation of target membrane perturbations preceding its disruption.
    Methods and Applications in Fluorescence. Roč. 13, č. 1 (2025), č. článku 015001. ISSN 2050-6120. E-ISSN 2050-6120
    R&D Projects: GA ČR(CZ) GA22-08857S; GA MŠMT(CZ) LX22NPO5103
    Institutional support: RVO:61388963 ; RVO:61388955
    Keywords : LEGO-lipophosphonoxins * membrane * naphthyl fluorescence * time-resolved anisotropy * quenching * naphthyl excimer
    OECD category: Organic chemistry; Physical chemistry (UFCH-W)
    Impact factor: 2.4, year: 2023 ; AIS: 0.559, rok: 2023
    Method of publishing: Open access
    Result website:
    https://doi.org/10.1088/2050-6120/ad8abfDOI: https://doi.org/10.1088/2050-6120/ad8abf
    Permanent Link: https://hdl.handle.net/11104/0357664
     
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    10.10882050-6120ad8abf.pdf54 MBPublisher’s postprintopen-access
     
    Research data: Zenodo
  4. 4.
    0600120 - ÚFCH JH 2025 RIV US eng J - Journal Article
    Korolainen, H. - Olžyńska, Agnieszka - Pajerski, Wojciech - Chytrosz-Wrobel, Paulina - Vattulainen, I. - Kulig, W. - Cwiklik, Lukasz
    Assessing vitamin E acetate as a proxy for E-cigarette additives in a realistic pulmonary surfactant model.
    Scientific Reports. Roč. 14, č. 1 (2024), č. článku 23805. ISSN 2045-2322. E-ISSN 2045-2322
    R&D Projects: GA ČR(CZ) GA21-19854S
    Institutional support: RVO:61388955
    Keywords : particle mesh ewald * alpha-tocopherol * force-field * dynamics * simulations * validation * topography * membranes * proteins * Pulmonary surfactant * Lung surfactant * Vaping-associated pulmonary injury * evali * Molecular dynamics simulation
    OECD category: Physical chemistry
    Impact factor: 3.8, year: 2023 ; AIS: 1.061, rok: 2023
    Method of publishing: Open access
    DOI: https://doi.org/10.1038/s41598-024-75301-8
    Permanent Link: https://hdl.handle.net/11104/0357479
     
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    0600120.pdf12 MBopen accessPublisher’s postprintopen-access
     
  5. 5.
    0598610 - ÚFCH JH 2025 RIV GB eng J - Journal Article
    Scollo, Federica - Tempra, Carmelo - Evci, Huseyin - Riopedre Fernández, Miguel - Olžyńska, Agnieszka - Javanainen, Matti - Uday, Arunima - Cebecauer, Marek - Cwiklik, Lukasz - Martinez-Seara, Hector - Jungwirth, Pavel - Jurkiewicz, Piotr - Hof, Martin
    Can calmodulin bind to lipids of the cytosolic leaflet of plasma membranes?
    Open Biology. Roč. 14, č. 9 (2024), č. článku 240067. ISSN 2046-2441. E-ISSN 2046-2441
    R&D Projects: GA ČR(CZ) GX19-26854X
    Research Infrastructure: CIISB II - 90127
    Institutional support: RVO:61388955 ; RVO:61388963
    Keywords : resonance sensors * phosphatidylserine * fluorescence * bilayer * phosphatidylethanolamine * fluidity * domain * calmodulin * lipid membrane * phosphatidylethanolamine * phosphatidylserine * calcium
    OECD category: Physical chemistry; Physical chemistry (UOCHB-X)
    Impact factor: 4.5, year: 2023 ; AIS: 1.954, rok: 2023
    Method of publishing: Open access
    Result website:
    https://royalsocietypublishing.org/doi/10.1098/rsob.240067DOI: https://doi.org/10.1098/rsob.240067
    Permanent Link: https://hdl.handle.net/11104/0356222
     
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    0598610.pdf61.3 MBopen accessPublisher’s postprintopen-access
     
  6. 6.
    0582992 - ÚFCH JH 2025 RIV NL eng J - Journal Article
    Thakur, Garima Chand Nakul - Uday, Arunima - Cebecauer, Marek - Roos, W. H. - Cwiklik, Lukasz - Hof, Martin - Jurkiewicz, Piotr - Melcrová, Adéla
    Charge of a transmembrane peptide alters its interaction with lipid membranes.
    Colloids and Surfaces B-Biointerfaces. Roč. 235, MAR 2024 (2024), č. článku 113765. ISSN 0927-7765. E-ISSN 1873-4367
    R&D Projects: GA ČR(CZ) GX19-26854X
    Institutional support: RVO:61388955
    Keywords : integral membrane protein * FRET-GP * AFM imaging
    OECD category: Physical chemistry
    Impact factor: 5.4, year: 2023 ; AIS: 0.713, rok: 2023
    Method of publishing: Open access
    DOI: https://doi.org/10.1016/j.colsurfb.2024.113765
    Permanent Link: https://hdl.handle.net/11104/0351018
     
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    0582992.pdf15.1 MBopen accessPublisher’s postprintopen-access
     
  7. 7.
    0581632 - ÚFCH JH 2025 RIV US eng J - Journal Article
    Saija, Maria Chiara - Vazdar, Katarina - Pajerski, Wojciech - Olžyńska, Agnieszka - Daull, P. - Garrigues, J. - Cwiklik, Lukasz
    Comparative Study of Latanoprost Drug Delivery Systems for Glaucoma Treatment and Their Interaction with the Tear Film Lipid Layer Models.
    Molecular Pharmaceutics. Roč. 21, č. 1 (2024), s. 126-136. ISSN 1543-8384. E-ISSN 1543-8392
    R&D Projects: GA ČR(CZ) GA21-19854S
    Institutional support: RVO:61388955
    Keywords : bak-preserved latanoprost * pharmacokinetics * thickness * ester * oil-in-water nanoemulsion * drug delivery systems * ocular drug delivery * ophthalmology * drug formulations * latanoprost * Xalatan * Monoprost * nanomedicine * molecular dynamics simulations * Langmuir lipid films * surface tension
    OECD category: Physical chemistry
    Impact factor: 4.5, year: 2023 ; AIS: 0.82, rok: 2023
    Method of publishing: Limited access
    Result website:
    https://pubs.acs.org/doi/10.1021/acs.molpharmaceut.3c00635DOI: https://doi.org/10.1021/acs.molpharmaceut.3c00635
    Permanent Link: https://hdl.handle.net/11104/0349741
     
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    0581632.pdf64.8 MBPublisher’s postprintrequire
     
  8. 8.
    0578939 - ÚFCH JH 2024 RIV US eng J - Journal Article
    Chytrosz-Wrobel, P. - Golda-Cepa, M. - Drozdz, K. - Rysz, J. - Kubisiak, P. - Kulig, W. - Brzychczy-Wloch, M. - Cwiklik, Lukasz - Kotarba, A.
    In Vitro and In Silico Studies of Functionalized Polyurethane Surfaces toward Understanding Biologically Relevant Interactions.
    ACS Biomaterials Science & Engineering. Roč. 9, č. 11 (2023), s. 6112-6122. ISSN 2373-9878. E-ISSN 2373-9878
    R&D Projects: GA ČR GF22-27317K
    Institutional support: RVO:61388955
    Keywords : nitrogen plasma treatment * biomedical applications * biomaterials * crystallinity * polymers * protein * chain * polyurethane * oxygen plasma * biocompatibility * bacteria adhesion * moleculardynamics
    OECD category: Physical chemistry
    Impact factor: 5.5, year: 2023 ; AIS: 0.874, rok: 2023
    Method of publishing: Open access
    DOI: https://doi.org/10.1021/acsbiomaterials.3c01367
    Permanent Link: https://hdl.handle.net/11104/0347848
     
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    0578939.pdf09.9 MBopen accessPublisher’s postprintopen-access
     
  9. 9.
    0578225 - ÚFCH JH 2025 RIV NL eng J - Journal Article
    Saija, Maria Chiara - Melcrová, Adéla - Pajerski, Wojciech - Schachter, I. - Javanainen, M. - Cebecauer, Marek - Cwiklik, Lukasz
    Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study.
    Biophysical Chemistry. Roč. 304, JAN 2024 (2024), č. článku 107124. ISSN 0301-4622. E-ISSN 1873-4200
    R&D Projects: GA ČR(CZ) GX19-26854X
    Institutional support: RVO:61388955
    Keywords : PAG * membranes * Palmitoylation
    OECD category: Physical chemistry
    Impact factor: 3.3, year: 2023 ; AIS: 0.544, rok: 2023
    Method of publishing: Limited access
    Result website:
    https://www.sciencedirect.com/science/article/pii/S0301462223001758DOI: https://doi.org/10.1016/j.bpc.2023.107124
    Permanent Link: https://hdl.handle.net/11104/0347250
     
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    0578225.pdf05.1 MBPublisher’s postprintrequire
     
  10. 10.
    0576891 - ÚFCH JH 2024 RIV NL eng J - Journal Article
    Riedlová, Kamila - Saija, Maria Chiara - Olžyńska, Agnieszka - Vazdar, Katarina - Daull, P. - Garrigues, J. - Cwiklik, Lukasz
    Latanoprost incorporates in the tear film lipid layer: An experimental and computational model study.
    International Journal of Pharmaceutics. Roč. 645, OCT 2023 (2023), č. článku 123367. ISSN 0378-5173. E-ISSN 1873-3476
    R&D Projects: GA ČR(CZ) GA21-19854S
    Institutional support: RVO:61388955
    Keywords : Tear film * Latanoprost * Glaucoma * Tear film lipid layer * Topical delivery * Ophthalmology
    OECD category: Physical chemistry
    Impact factor: 5.3, year: 2023 ; AIS: 0.748, rok: 2023
    Method of publishing: Limited access
    DOI: https://doi.org/10.1016/j.ijpharm.2023.123367
    Permanent Link: https://hdl.handle.net/11104/0346287
     
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    0576891.pdf03.1 MBPublisher’s postprintrequire
     

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