Search results
- 1.0466145 - ÚOCHB 2017 RIV NL eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Nakashima, K. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Hg-II/Ag-I-mediated base pairs and their NMR spectroscopic studies.
Inorganica chimica acta. Roč. 452, Oct 1 (2016), s. 34-42. ISSN 0020-1693. E-ISSN 1873-3255
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : NMR * Hg * Ag * metal-DNA
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.002, year: 2016
Permanent Link: http://hdl.handle.net/11104/0264544 - 2.0454129 - ÚOCHB 2016 RIV GB eng J - Journal Article
Tanaka, Y. - Kondo, J. - Sychrovský, Vladimír - Šebera, Jakub - Dairaku, T. - Saneyoshi, H. - Urata, H. - Torigoe, H. - Ono, A.
Structures, physicochemical properties, and applications of T-Hg-II-T, C-Ag-I-C, and other metallo-base-pairs.
Chemical Communications. Roč. 51, č. 98 (2015), s. 17343-17360. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : metal-mediated base-pairs * T–Hg–T * C–Ag–C
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 6.567, year: 2015
Permanent Link: http://hdl.handle.net/11104/0254830 - 3.0444868 - ÚOCHB 2016 RIV GB eng J - Journal Article
Dairaku, T. - Furuita, K. - Sato, H. - Šebera, Jakub - Yamanaka, D. - Otaki, H. - Kikkawa, S. - Kondo, Y. - Katahira, R. - Bickelhaupt, F. M. - Guerra, C. F. - Ono, A. - Sychrovský, Vladimír - Kojima, C. - Tanaka, Y.
Direct detection of the mercury-nitrogen bond in the thymine-Hg-II-thymine base-pair with Hg-199 NMR spectroscopy.
Chemical Communications. Roč. 51, č. 40 (2015), s. 8488-8491. ISSN 1359-7345. E-ISSN 1364-548X
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : T-Hg-T * NMR * spin-spin coupling * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 6.567, year: 2015
http://pubs.rsc.org/en/content/articlepdf/2015/cc/c5cc02423d
Permanent Link: http://hdl.handle.net/11104/0247339 - 4.0428654 - ÚOCHB 2015 RIV GB eng J - Journal Article
Yamaguchi, H. - Šebera, Jakub - Kondo, J. - Oda, S. - Komuro, T. - Kawamura, T. - Dairaku, T. - Kondo, Y. - Okamoto, I. - Ono, A. - Burda, J. V. - Kojima, C. - Sychrovský, Vladimír - Tanaka, Y.
The structure of metallo-DNA with consecutive thymine-Hg-II-thymine base pairs explains positive entropy for the metallo base pair formation.
Nucleic Acids Research. Roč. 42, č. 6 (2014), s. 4094-4099. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR GAP205/10/0228
Institutional support: RVO:61388963
Keywords : NMR structures * mercury * metalation * metal-DNA binding * DFT
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 9.112, year: 2014
http://nar.oxfordjournals.org/content/42/6/4094.full
Permanent Link: http://hdl.handle.net/11104/0233994 - 5.0424754 - ÚOCHB 2014 RIV NL eng J - Journal Article
Emmer, J. - Vavrinská, A. - Sychrovský, Vladimír - Benda, Ladislav - Kříž, Z. - Koča, J. - Boelens, R. - Sklenář, V. - Trantírek, L.
Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N-15 chemical shielding anisotropy tensors.
Journal of Biomolecular NMR. Roč. 55, č. 1 (2013), s. 59-70. ISSN 0925-2738. E-ISSN 1573-5001
R&D Projects: GA ČR GAP205/10/0228
Grant - others:CEITEC(XE) CZ.1.05/1.1.00/02.0068
Institutional support: RVO:61388963
Keywords : CSA * phosphorylation * amidic nitrogen * serine * threonine * tyrosine * protein * NMR
Subject RIV: CE - Biochemistry
Impact factor: 3.305, year: 2013
Permanent Link: http://hdl.handle.net/11104/0230810 - 6.0394761 - ÚOCHB 2014 RIV DE eng J - Journal Article
Šebera, Jakub - Burda, J. - Straka, Michal - Ono, A. - Kojima, C. - Tanaka, Y. - Sychrovský, Vladimír
Formation of a Thymine-Hg-II-Thymine Metal-Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway.
Chemistry - A European Journal. Roč. 19, č. 30 (2013), s. 9884-9894. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR GAP205/10/0228; GA MŠMT(CZ) LH11033
Institutional support: RVO:61388963
Keywords : DNA structures * mercury * metalation * metal-DNA binding * nucleobases
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 5.696, year: 2013
Permanent Link: http://hdl.handle.net/11104/0223107 - 7.0382846 - ÚOCHB 2013 RIV US eng J - Journal Article
Šebera, Jakub - Trantírek, L. - Tanaka, Y. - Sychrovský, Vladimír
Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-OxoG with the hOGG1 DNA Repair Protein.
Journal of Physical Chemistry B. Roč. 116, č. 41 (2012), s. 12535-12544. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR GAP205/10/0228
Grant - others:AV ČR(CZ) M200551205
Institutional research plan: CEZ:AV0Z40550506
Keywords : hOGG1 enzyme * DFT * glycosidic bond cleavage
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.607, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007200 - 8.0382049 - ÚOCHB 2013 RIV US eng J - Journal Article
Benda, Ladislav - Straka, Michal - Sychrovský, Vladimír - Bouř, Petr - Tanaka, Y.
Detection of Mercury - TpT Dinucleotide Binding by Raman Spectra: A Computional Study.
Journal of Physical Chemistry A. Roč. 116, č. 32 (2012), s. 8313-8320. ISSN 1089-5639. E-ISSN 1520-5215
R&D Projects: GA ČR GAP208/11/0105; GA ČR GAP205/10/0228; GA MŠMT(CZ) LH11033
Grant - others:GA ČR(CZ) GAP206/12/0539
Institutional research plan: CEZ:AV0Z40550506
Keywords : nucleic acids * mercury complexes * density functional theory * Raman spectroscopy * vibrational analysis
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.771, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007179 - 9.0379080 - ÚOCHB 2013 RIV US eng J - Journal Article
Benda, Ladislav - Sochorová Vokáčová, Zuzana - Straka, Michal - Sychrovský, Vladimír
Correlating the P-31 NMR Chemical Shielding Tensor and the (2)J(P,C) Spin-Spin Coupling Constants with Torsion Angles zeta and alpha in the Backbone of Nucleic Acids.
Journal of Physical Chemistry B. Roč. 116, č. 12 (2012), s. 3823-3833. ISSN 1520-6106. E-ISSN 1520-5207
R&D Projects: GA ČR GAP205/10/0228; GA ČR GPP208/10/P398; GA ČR GA203/09/2037
Institutional research plan: CEZ:AV0Z40550506
Keywords : nucleic acids * phosphorus NMR * NMR calculations * cross-correlated relaxation * spin–spin coupling constants
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 3.607, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007102 - 10.0379079 - ÚOCHB 2013 RIV US eng J - Journal Article
Sychrovský, Vladimír - Sochorová Vokáčová, Zuzana - Trantírek, L.
Guanine Bases in DNA G-Quadruplex Adopt Nonplanar Geometries Owing to Solvation and Base Pairing.
Journal of Physical Chemistry A. Roč. 116, č. 16 (2012), s. 4144-4151. ISSN 1089-5639. E-ISSN 1520-5215
R&D Projects: GA ČR GAP205/10/0228
Institutional research plan: CEZ:AV0Z40550506
Keywords : pyramidalization * nonplanarity * G-quadruplex * DNA * solvent effect
Subject RIV: CF - Physical ; Theoretical Chemistry
Impact factor: 2.771, year: 2012
Permanent Link: http://hdl.handle.net/11104/0007101