Search results
- 1.0582831 - MBÚ 2025 RIV US cze J - Journal Article
Vaňková Hausnerová, Viola - Shoman, Mahmoud - Kumar, Dilip - Schwarz, Marek - Modrák, Martin - Jirát Matějčková, Jitka - Mikesková, Eliška - Neva, Silva - Herrmannová, Anna - Šiková, Michaela - Halada, Petr - Novotná, I. - Pajer, J. - Valášek, Leoš Shivaya - Převorovský, M. - Krásný, Libor - Hnilicová, Jarmila
RIP-seq reveals RNAs that interact with RNA polymerase and primary sigma factors in bacteria.
Nucleic Acids Research. (2024). ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT(CZ) EF18_046/0015974; GA ČR(CZ) GA23-05622S
Grant - others:AV ČR(CZ) Premium Academiae of the Academy of Sciences of the Czech Republic
Program: Akademická prémie - Praemium Academiae
Institutional support: RVO:61388971
Keywords : RIP-seq reveals * RNA polymerase * 6S RNA * Ms1 RNA
OECD category: Microbiology
Impact factor: 14.9, year: 2022
Method of publishing: Open access
https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae081/7606967?login=true
Permanent Link: https://hdl.handle.net/11104/0350882File Download Size Commentary Version Access Vankova Hausnerova --seq reveals RNAs that interact with RNA polymerase... .pdf 0 5.9 MB Author´s preprint open-access - 2.0580571 - MBÚ 2025 RIV GB eng J - Journal Article
Pospíšil, Jiří - Schwarz, Marek - Ziková, Alice - Vítovská, Dragana - Hradilová, Miluše - Kolář, Michal - Křenková, Alena - Hubálek, Martin - Krásný, Libor - Vohradský, Jiří
σSUPE/SUP of Streptomyces coelicolor can function both as a direct activator or repressor of transcription.
Communications Biology. Roč. 7, January 6 (2024), č. článku 46. E-ISSN 2399-3642
R&D Projects: GA ČR(CZ) GF22-06342K; GA MŠMT(CZ) LM2023055; GA MŠMT(CZ) LX22NPO5103
Research Infrastructure: ELIXIR CZ III - 90255
Institutional support: RVO:61388971 ; RVO:68378050 ; RVO:61388963
Keywords : σ factors * proteins * Streptomyces coelicolor * gene expression
OECD category: Microbiology; Biochemistry and molecular biology (UMG-J)
Impact factor: 5.9, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s42003-023-05716-y
Permanent Link: https://hdl.handle.net/11104/0349344File Download Size Commentary Version Access 2024_Pospisil_Communications Biology.pdf 1 2.8 MB Publisher’s postprint open-access - 3.0578016 - MBÚ 2024 RIV US eng J - Journal Article
Burton, A. T. - Pospíšilová, Debora - Sudzinová, Petra - Snider, E. V. - Burrage, A. M. - Krásný, Libor - Kearns, D. B.
The alternative sigma factor SigN of Bacillus subtilis is intrinsically toxic.
Journal of Bacteriology. Roč. 205, č. 10 (2023), e0011223. ISSN 0021-9193. E-ISSN 1098-5530
R&D Projects: GA ČR(CZ) GF22-06342K; GA MŠMT(CZ) LX22NPO5103
Institutional support: RVO:61388971
Keywords : factor SigN * Bacillus subtilis * RNA polymerase
OECD category: Microbiology
Impact factor: 3.2, year: 2022
Method of publishing: Open access
https://journals.asm.org/doi/10.1128/jb.00112-23
Permanent Link: https://hdl.handle.net/11104/0347062File Download Size Commentary Version Access Burton - The alternative sigma factor SigN of Bacillus subtilis.pdf 1 2.4 MB Publisher’s postprint open-access - 4.0575356 - MBÚ 2024 RIV US eng J - Journal Article
Sudzinová, Petra - Šanderová, Hana - Koval, Tomáš - Skálová, Tereza - Borah, Nabajyoti - Hnilicová, Jarmila - Kouba, Tomáš - Dohnálek, Jan - Krásný, Libor
What the Hel: recent advances in understanding rifampicin resistance in bacteria.
FEMS Microbiology Reviews. Roč. 47, č. 6 (2023), č. článku fuac051. ISSN 0168-6445. E-ISSN 1574-6976
R&D Projects: GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT EF15_003/0000447
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388963
Keywords : rifampicin * antibiotics * resistance * bacteria * RNA polymerase * HelD * HelR
OECD category: Microbiology; Microbiology (BTO-N); Biochemistry and molecular biology (UOCHB-X)
Impact factor: 11.3, year: 2022
Method of publishing: Open access
https://academic.oup.com/femsre/advance-article/doi/10.1093/femsre/fuac051/6957393?login=true
Permanent Link: https://hdl.handle.net/11104/0345143File Download Size Commentary Version Access 2023_Sudzinova_FEMS Microbiol Rev_HelD.pdf 1 3.7 MB Author´s preprint require - 5.0575354 - MBÚ 2024 RIV US eng J - Journal Article
Tužinčin, D. - Padrta, P. - Šanderová, Hana - Rabatinová, Alžběta - Bendová, K. - Krásný, Libor - Zídek, L. - Kadeřávek, P.
Characterization of a transitionally occupied state and thermal unfolding of domain 1.1 of s(A) factor of RNA polymerase from Bacillus subtilis.
Proteins-Structure, Function and Bioinformatics. Roč. 91, č. 9 (2023), s. 1276-1287. ISSN 0887-3585. E-ISSN 1097-0134
R&D Projects: GA MŠMT(CZ) LX22NPO5103
Institutional support: RVO:61388971
Keywords : s(A) factor * RNA polymerase * Bacillus subtilis * nmr * conformational exchange
OECD category: Microbiology
Impact factor: 2.9, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1002/prot.26531
Permanent Link: https://hdl.handle.net/11104/0345141File Download Size Commentary Version Access Characterization of a transitionally occupied state and thermal.pdf 1 1.8 MB Publisher’s postprint open-access - 6.0559721 - ÚOCHB 2023 RIV US eng J - Journal Article
Do Pham, Duy Dinh - Mojr, Viktor - Helusová, M. - Mikušová, Gabriela - Pohl, Radek - Dávidová, Eva - Šanderová, Hana - Vítovská, Dragana - Bogdanová, K. - Večeřová, R. - Sedláková, M. H. - Fišer, R. - Sudzinová, Petra - Pospíšil, Jiří - Benada, Oldřich - Křížek, T. - Galandáková, A. - Kolář, M. - Krásný, Libor - Rejman, Dominik
LEGO-Lipophosphonoxins: A Novel Approach in Designing Membrane Targeting Antimicrobials.
Journal of Medicinal Chemistry. Roč. 65, č. 14 (2022), s. 10045-10078. ISSN 0022-2623. E-ISSN 1520-4804
R&D Projects: GA MZd(CZ) NV17-29680A; GA MŠMT(CZ) 8F19006; GA ČR(CZ) GA22-08857S; GA MŠMT(CZ) LX22NPO5103; GA ČR(CZ) GA22-12023S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : small molecules * antibacterial * resistant
OECD category: Microbiology; Medicinal chemistry (MBU-M)
Impact factor: 7.3, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jmedchem.2c00684
Permanent Link: https://hdl.handle.net/11104/0332930File Download Size Commentary Version Access acs.jmedchem.2c00684.pdf 5 6.8 MB Publisher’s postprint open-access - 7.0559506 - ÚOCHB 2023 RIV GB eng J - Journal Article
Gracias, Filip - Ruiz-Larrabeiti, Olatz - Vaňková Hausnerová, Viola - Pohl, Radek - Klepetářová, Blanka - Sýkorová, Veronika - Krásný, Libor - Hocek, Michal
Homologues of epigenetic pyrimidines: 5-alkyl-, 5-hydroxyalkyl and 5-acyluracil andcytosine nucleotides: synthesis, enzymatic incorporation into DNA and effect on transcription with bacterial RNA polymerase.
RSC Chemical Biology. Roč. 3, č. 8 (2022), s. 1069-1075. ISSN 2633-0679. E-ISSN 2633-0679
R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GX20-00885X; GA ČR(CZ) GA22-12023S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : major-groove * 5-formylcytosine * 5-hydroxymethylcytosine
OECD category: Biochemistry and molecular biology; Microbiology (MBU-M)
Impact factor: 4.1, year: 2022
Method of publishing: Open access
https://doi.org/10.1039/D2CB00133K
Permanent Link: https://hdl.handle.net/11104/0332783 - 8.0558957 - ÚOCHB 2023 RIV US eng J - Journal Article
Pospíšil, Šimon - Panattoni, Alessandro - Gracias, Filip - Sýkorová, Veronika - Vaňková Hausnerová, Viola - Vítovská, Dragana - Šanderová, Hana - Krásný, Libor - Hocek, Michal
Epigenetic Pyrimidine Nucleotides in Competition with Natural dNTPs as Substrates for Diverse DNA Polymerases.
ACS Chemical Biology. Roč. 17, č. 10 (2022), s. 2781-2788. ISSN 1554-8929. E-ISSN 1554-8937
R&D Projects: GA ČR(CZ) GX20-00885X; GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA22-12023S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : gene * cleavage * 5-hydroxymethyl
OECD category: Biochemistry and molecular biology
Impact factor: 4, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acschembio.2c00342
Permanent Link: https://hdl.handle.net/11104/0332438 - 9.0558580 - MBÚ 2023 RIV CH eng J - Journal Article
Vaňková Hausnerová, Viola - Marvalová, Olga - Šiková, Michaela - Shoman, Mahmoud - Havelková, Jarmila - Kambová, Milada - Janoušková, Martina - Kumar, Dilip - Halada, Petr - Schwarz, Marek - Krásný, Libor - Hnilicová, Jarmila - Pánek, Josef
Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search.
Frontiers in Microbiology. Roč. 13, MAY 11 2022 (2022), č. článku 848536. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GA20-07473S; GA ČR(CZ) GA20-12109S; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:61388971
Keywords : 6s rna * escherichia-coli * sp-nov. * short transcripts * noncoding rnas * glycomyces * release * growth * sequence * requires * sRNA * Actinobacteria * Ms1 RNA * Streptomyces * gene synteny * Mycobacterium * 6s rna
OECD category: Microbiology
Impact factor: 5.2, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2022.848536/full
Permanent Link: http://hdl.handle.net/11104/0332218 - 10.0556981 - ÚOCHB 2023 RIV DE eng J - Journal Article
Chakrapani, Aswathi - Ruiz-Larrabeiti, Olatz - Pohl, Radek - Svoboda, Martin - Krásný, Libor - Hocek, Michal
Glucosylated 5-Hydroxymethylpyrimidines as Epigenetic DNA Bases Regulating Transcription and Restriction Cleavage.
Chemistry - A European Journal. Roč. 28, č. 31 (2022), č. článku e202200911. ISSN 0947-6539. E-ISSN 1521-3765
R&D Projects: GA ČR(CZ) GX20-00885X; GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA22-12023S
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : epigenetics * glycosylations * nucleobases * nucleotides * transcription
OECD category: Biochemistry and molecular biology; Organic chemistry (MBU-M)
Impact factor: 4.3, year: 2022
Method of publishing: Limited access
https://doi.org/10.1002/chem.202200911
Permanent Link: http://hdl.handle.net/11104/0331105