Search results
- 1.0547429 - MBÚ 2022 RIV CH eng J - Journal Article
Shaposhnikova, Anastasiia - Kutý, M. - Chaloupková, R. - Damborský, J. - Smatanová, I.K. - Minofar, Babak - Prudnikova, T.
Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids.
Crystals. Roč. 11, č. 9 (2021), č. článku 1052. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015047
Research Infrastructure: e-INFRA CZ - 90140; RECETOX RI - 90121
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase (HLD) * ionic liquids (ILs) * molecular dynamics (MD) simulations * protein stability * 2-hydroxyethylammonium acetate ([ETA][ACC]) * 1-butyl-3-methylimidazolium methyl sulfate ([EMIM][CHS])
OECD category: Biophysics
Impact factor: 2.670, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2073-4352/11/9/1052
Permanent Link: http://hdl.handle.net/11104/0323664 - 2.0539596 - ÚMG 2021 RIV SE eng J - Journal Article
Marek, M. - Chaloupková, R. - Prudnikova, T. - Sato, Y. - Řezáčová, Pavlína - Nagata, Y. - Smatanová, I.K. - Damborský, J.
Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family.
Computational and Structural Biotechnology Journal. Roč. 18, June (2020), s. 1352-1362. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68378050
Keywords : Haloalkane dehalogenase (HLD) * Biocatalysis * Loop-helix transplantation * X-ray crystallography * Enantioselectivity * Access tunnel * Enzyme engineering * Protein design
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302828?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0317304 - 3.0520840 - MBÚ 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, K. - Planas-Iglesias, J. - Daniel, L. - Prudnikova, Tatyana - Brezovský, J. - Bednář, D. - Kutá Smatanová, Ivana - Chaloupková, R. - Dambrovský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015055
Research Infrastructure: C4SYS - 90055; RECETOX II - 90051; ELIXIR-CZ - 90047; CESNET II - 90042; CERIT-SC - 90085
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase * thermostability * psychrophile
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0305501 - 4.0511267 - ÚOCHB 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, Katsiaryna - Planas-Iglesias, J. - Daniel, L. - Prudnikova, T. - Brezovský, J. - Bednář, D. - Kutá Smatanová, I. - Chaloupková, R. - Damborský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * thermostability * psychrophile * access tunnel * dimer * catalytic pentad * enantiselectivity
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0301587 - 5.0508541 - MBÚ 2020 RIV CH eng J - Journal Article
Prudnikova, Tatyana - Kascaková, B. - Mesters, J. R. - Grinkevich, P. - Havlíčková, P. - Mazur, Andrii - Shaposhnikova, Anastasiia - Chaloupková, R. - Dambrovský, J. - Kutý, Michal - Kutá Smatanová, Ivana
Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site.
Crystals. Roč. 9, č. 7 (2019), č. článku 375. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015055
Grant - others:AV ČR(CZ) DAAD-16-09
Program: Bilaterální spolupráce
Research Infrastructure: C4SYS - 90055
Institutional support: RVO:61388971
Keywords : Haloalkane dehalogenase * halide-binding site * random microseeding
OECD category: Biochemistry and molecular biology
Impact factor: 2.404, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2073-4352/9/7/375
Permanent Link: http://hdl.handle.net/11104/0299416File Download Size Commentary Version Access 190_Crystallization and Crystallographic Analysis of a.pdf 2 3.2 MB Publisher’s postprint require - 6.0505903 - ÚMG 2020 RIV US eng J - Journal Article
Tratsiak, K. - Prudnikova, Tatyana - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, P. - Kutý, Michal - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, Ivana
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, Pt 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biophysics; Biochemistry and molecular biology (MBU-M)
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0297526 - 7.0505284 - ÚOCHB 2020 RIV GB eng J - Journal Article
Tratsiak, Katsiaryna - Prudnikova, T. - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, Petr - Kutý, M. - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, I.
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, č. 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biochemistry and molecular biology
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0296758 - 8.0472381 - ÚOCHB 2017 RIV US eng J - Journal Article
Březovský, J. - Babková, P. - Degtjarik, O. - Fořtová, A. - Gora, A. - Iermak, I. - Řezáčová, Pavlína - Dvořák, P. - Kutá Smatanová, I. - Prokop, Z. - Chaloupková, R. - Damborský, J.
Engineering a de Novo Transport Tunnel.
ACS Catalysis. Roč. 6, č. 11 (2016), s. 7597-7610. ISSN 2155-5435. E-ISSN 2155-5435
Institutional support: RVO:61388963
Keywords : transport tunnel * protein engineering * protein design * activity * specificity
Subject RIV: CE - Biochemistry
Impact factor: 10.614, year: 2016
Permanent Link: http://hdl.handle.net/11104/0269704 - 9.0472361 - MBÚ 2017 RIV US eng J - Journal Article
Březovský, J. - Babková, P. - Degtjarik, Oksana - Fořtová, A. - Gora, A. - Iermak, Iuliia - Řezáčová, Pavlína - Dvořák, P. - Kutá Smatanová, Ivana - Prokop, Z. - Chaloupková, R. - Damborský, J.
Engineering a de Novo Transport Tunnel.
ACS Catalysis. Roč. 6, č. 11 (2016), s. 7597-7610. ISSN 2155-5435. E-ISSN 2155-5435
Institutional support: RVO:61388971 ; RVO:68378050
Keywords : transport tunnel * protein engineering * protein design
Subject RIV: EE - Microbiology, Virology
Impact factor: 10.614, year: 2016
Permanent Link: http://hdl.handle.net/11104/0269689 - 10.0456331 - BFÚ 2016 RIV GB eng J - Journal Article
Dvořák, P. - Chrást, L. - Nikel, P. - Fedr, Radek - Souček, Karel - Sedláčková, M. - Chaloupková, R. - Lorenzo, V. - Prokop, Z. - Damborský, J.
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21 (DE3) carrying a synthetic metabolic pathway.
Microbial Cell Factories. Roč. 14, č. 201 (2015). E-ISSN 1475-2859
Institutional support: RVO:68081707
Keywords : Metabolic burden * Substrate toxicity * Escherichia coli
Subject RIV: BO - Biophysics
Impact factor: 3.744, year: 2015
Permanent Link: http://hdl.handle.net/11104/0256895