Search results
- 1.0585513 - MBÚ 2025 RIV US eng J - Journal Article
Zákopčaník, Marek - Kavan, Daniel - Novák, Petr - Loginov, Dmitry Sergej
Quantifying the Impact of the Peptide Identification Framework on the Results of Fast Photochemical Oxidation of Protein Analysis.
Journal of Proteome Research. Roč. 23, č. 2 (2023), s. 609-617. ISSN 1535-3893. E-ISSN 1535-3907
R&D Projects: GA ČR(CZ) GA22-27695S
EU Projects: European Commission(XE) 823839 - EPIC-XS
Institutional support: RVO:61388971
Keywords : mass-spectrometry * exchange * fpop * searchengine * structural proteomics
OECD category: Microbiology
Impact factor: 4.4, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00390
Permanent Link: https://hdl.handle.net/11104/0353197 - 2.0583029 - MBÚ 2024 RIV US eng J - Journal Article
Zákopčaník, Marek - Kavan, Daniel - Novák, Petr - Loginov, Dmitry Sergej
Quantifying the Impact of the Peptide Identification Framework on the Results of Fast Photochemical Oxidation of Protein Analysis.
Journal of Proteome Research. Roč. 23, č. 2 (2023), s. 609-617. ISSN 1535-3893. E-ISSN 1535-3907
EU Projects: European Commission(XE) 823839 - EPIC-XS
Institutional support: RVO:61388971
Keywords : mass-spectrometry * exchange * fpop * searchengine * structural proteomics
OECD category: Microbiology
Impact factor: 4.4, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.jproteome.3c00390
Permanent Link: https://hdl.handle.net/11104/0351128 - 3.0579428 - MBÚ 2024 RIV US eng J - Journal Article
Polák, Marek - Palasser, M. - Kádek, Alan - Kavan, Daniel - Wootton, C. A. - Delsuc, M. - Breuker, K. - Novák, Petr - van Agthoven, Maria Andrea
Top-Down Proteoform Analysis by 2D MS with Quadrupolar Detection.
Analytical Chemistry. Roč. 95, č. 44 (2023), s. 16123-16130. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA MŠMT(CZ) EF18_053/0017705; GA ČR(CZ) GA22-27695S; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : 2-dimensional mass-spectrometry * electron-capture dissociation * chemical cross-linking * ultraviolet photodissociation * resolution * precursor
OECD category: Analytical chemistry
Impact factor: 7.4, year: 2022
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.analchem.3c02225
Permanent Link: https://hdl.handle.net/11104/0348240 - 4.0574564 - FGÚ 2024 RIV NL eng J - Journal Article
Alquezar-Artieda, N. - Kužílková, D. - Roberts, J. - Hložková, K. - Pecinová, Alena - Pecina, Petr - Zwyrtková, M. - Potůčková, E. - Kavan, Daniel - Heřmanová, I. - Žaliová, M. - Novák, Petr - Mráček, Tomáš - Šrámková, L. - Tennant, D. A. - Trka, J. - Starková, J.
Restored biosynthetic pathways induced by MSCs serve as rescue mechanism in leukemia cells after L-asparaginase therapy.
Blood Advances. Roč. 7, č. 10 (2023), s. 2228-2236. ISSN 2473-9529. E-ISSN 2473-9537
R&D Projects: GA ČR(CZ) GA21-18993S; GA MŠMT LX22NPO5102
Institutional support: RVO:67985823 ; RVO:61388971
Keywords : cancer metabolism * L-asparaginase * leukemia * resistance * glycolysis * fatty acid oxidation * MSCs * biosynthetic pathways
OECD category: Endocrinology and metabolism (including diabetes, hormones); Biochemistry and molecular biology (MBU-M)
Impact factor: 7.6, year: 2022
Method of publishing: Open access
https://doi.org/10.1182/bloodadvances.2021006431
Permanent Link: https://hdl.handle.net/11104/0345499File Download Size Commentary Version Access Restored biosynthetic pathways.pdf 2 1 MB Publisher’s postprint open-access - 5.0571673 - MBÚ 2024 RIV GB eng J - Journal Article
Pacheco-Garcia, J. L. - Anoz-Carbonell, E. - Loginov, Dmitry Sergej - Kavan, Daniel - Salido, E. - Man, Petr - Medina, M. - Pey, A. L.
Counterintuitive structural and functional effects due to naturally occurring mutations targeting the active site of the disease-associated NQO1 enzyme.
FEBS Journal. Roč. 290, č. 7 (2023), s. 1855-1873. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971
Keywords : catalytic mechanism * genotype-phenotype correlations * protein structure-function * structural stability
OECD category: Biochemistry and molecular biology
Impact factor: 5.4, year: 2022
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16677
Permanent Link: https://hdl.handle.net/11104/0343503 - 6.0564264 - MBÚ 2023 RIV NL eng J - Journal Article
Luis Pacheco-Garcia, J. - Loginov, Dmitry Sergej - Rizzuti, B. - Vaňková, Pavla - Neira, Jose L. - Kavan, Daniel - Mesa-Torres, N. - Guzzi, R. - Man, Petr - Pey, A. L.
A single evolutionarily divergent mutation determines the different FAD-binding affinities of human and rat NQO1 due to site-specific phosphorylation.
FEBS Letters. Roč. 596, č. 1 (2022), s. 29-41. ISSN 0014-5793. E-ISSN 1873-3468
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971 ; RVO:86652036
Keywords : epistasis * flavoprotein * molecular evolution * protein phosphorylation
OECD category: Biochemistry and molecular biology
Impact factor: 3.5, year: 2022
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/10.1002/1873-3468.14238
Permanent Link: https://hdl.handle.net/11104/0335965 - 7.0559847 - MBÚ 2023 RIV US eng J - Journal Article
Yassaghi, Ghazaleh - Kukačka, Zdeněk - Fiala, Jan - Kavan, Daniel - Halada, Petr - Volný, Michael - Novák, Petr
Top-Down Detection of Oxidative Protein Footprinting by Collision-Induced Dissociation,Electron-Transfer Dissociation, and Electron-Capture Dissociation.
Analytical Chemistry. Roč. 94, č. 28 (2022), s. 9993-10002. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971
Keywords : Fast photochemical oxidation of proteins * top-down * collision-induced dissociation * electron-transfer dissociation * electron-capture dissociation * mass spectrometry
OECD category: Analytical chemistry
Impact factor: 7.4, year: 2022
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.analchem.1c05476
Permanent Link: https://hdl.handle.net/11104/0334438 - 8.0557998 - MBÚ 2023 RIV US eng J - Journal Article
Giladi, M. - Bar-El, M. - Vaňková, Pavla - Ferofontov, A. - Melvin, E. - Alkaderi, S. - Kavan, Daniel - Redko, B. - Haimov, E. - Wiener, R. - Man, Petr - Haitin, Y.
Structural basis for long-chain isoprenoid synthesis by cis-prenyltransferases.
Science Advances. Roč. 8, č. 20 (2022), č. článku eabn1171. ISSN 2375-2548. E-ISSN 2375-2548
R&D Projects: GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : undecaprenyl-pyrophosphate synthase * length determination mechanism * nogo-b receptor * protein glycosylation * exchange * inhibitor * insights * mutation * subunit * complex
OECD category: Biochemistry and molecular biology
Impact factor: 13.6, year: 2022
Method of publishing: Open access
https://www.science.org/doi/10.1126/sciadv.abn1171
Permanent Link: http://hdl.handle.net/11104/0331948 - 9.0556153 - MBÚ 2023 RIV US eng J - Journal Article
Polák, Marek - Yassaghi, Ghazaleh - Kavan, Daniel - Filandr, František - Fiala, Jan - Kukačka, Zdeněk - Halada, Petr - Loginov, Dmitry Sergej - Novák, Petr
Utilization of Fast Photochemical Oxidation of Proteins and Both Bottom-up and Top-down Mass Spectrometry for Structural Characterization of a Transcription Factor-dsDNA Complex.
Analytical Chemistry. Roč. 94, č. 7 (2022), s. 3203-3210. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB II - 90127
Institutional support: RVO:61388971
Keywords : higher-order structure * chemical-modification * factor foxo4 * binding * domain * fpop * identification * peptides * topology * epitope
OECD category: Analytical chemistry
Impact factor: 7.4, year: 2022
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.analchem.1c04746
Permanent Link: https://hdl.handle.net/11104/0334008 - 10.0543807 - MBÚ 2022 RIV GB eng J - Journal Article
Filandrová, Růžena - Vališ, Karel - Černý, Jiří - Chmelík, Josef - Slavata, Lukáš - Fiala, Jan - Rosůlek, Michal - Kavan, Daniel - Man, Petr - Chum, Tomáš - Cebecauer, Marek - Fabris, D. - Novák, Petr
Motif orientation matters: Structural characterization of TEAD1 recognition of genomic DNA.
Structure. Roč. 29, č. 4 (2021), s. 345-356. ISSN 0969-2126. E-ISSN 1878-4186
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015043
EU Projects: European Commission(XE) 823839 - EPIC-XS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388955
Keywords : TEAD1 * genomic DNA * M-CAT motifs * ChIP-qPCR * presence of M-CAT
OECD category: Biochemistry and molecular biology; Biophysics (BTO-N); Physical chemistry (UFCH-W)
Impact factor: 5.871, year: 2021
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/abs/pii/S0969212620304652?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0320930File Download Size Commentary Version Access 0543807preprint.pdf 5 2.2 MB Author´s preprint open-access