Search results

  1. 1.
    0457080 - ÚOCHB 2016 CZ eng A - Abstract
    Zgarbová, M. - Otyepka, M. - Šponer, Jiří - Lankaš, Filip - Jurečka, P.
    Base pair fraying in molecular dynamics simulations of nucleic acids as a force field benchmark.
    Modeling Interactions in Biomolecules 7th. Praha: MATFYZPRESS, 2015 - (Burda, J.). s. 86. ISBN 978-80-7378-303-7.
    [Modeling Interactions in Biomolecules /7./. 14.09.2015-18.09.2015, Praha]
    Institutional support: RVO:61388963 ; RVO:68081707
    Keywords : nucleic acids * molecular dynamics simulations
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Permanent Link: http://hdl.handle.net/11104/0257519
     
     
  2. 2.
    0435302 - ÚFCH JH 2015 IT eng A - Abstract
    Civiš, Svatopluk - Ferus, Martin - Šponer, Judit E. - Šponer, Jiří
    High-energy chemistry of formamide: spectroscopy of LIGB plasma and a unified mechanism of nuvleic base formation.
    Bologna2014. The 23rd International Conference on High Resolution Molecular Spectroscopy. Book of Abstracts. Bologna: University of Bologna, 2014. s. 279-279.
    [Bologna2014. International Conference on High Resolution Molecular Spectroscopy /23./. 02.09.2014-06.09.2014, Bologna]
    R&D Projects: GA ČR(CZ) GA14-12010S
    Institutional support: RVO:61388955 ; RVO:68081707
    Keywords : spectroscopy * high-energy simulations
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Permanent Link: http://hdl.handle.net/11104/0239172
     
     
  3. 3.
    0425111 - ÚFCH JH 2014 US eng A - Abstract
    Šponer, Judit E. - Mládek, Arnošt - Ferus, Martin - Civiš, Svatopluk - Šponer, Jiří
    Quantum chemical studies on the formamide-based origin of life.
    Journal of Biomolecular Structure & Dynamics. Taylor & Francis. Roč. 31, SI (2013), s. 11-12. ISSN 0739-1102
    Institutional support: RVO:61388955 ; RVO:68081707
    Keywords : nucleobases
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Permanent Link: http://hdl.handle.net/11104/0231077
     
     
  4. 4.
    0364223 - ÚOCHB 2012 CZ eng A - Abstract
    Beššeová, Ivana - Réblová, Kamila - Leontis, N. B. - Šponer, Jiří
    Intrinsically flexible ribosomal RNA segments. Family C3-way junctions and their possible role in the translation.
    3rd Quantum Bioinorganic Chemistry Conference. Praha: -, 2011. s. 50-51.
    [Quantum Bioinorganic Chemistry Conference /3./. 25.06.2011-28.06.2011, Český Krumlov]
    Institutional research plan: CEZ:AV0Z40550506
    Keywords : ribosomal RNA segments
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Permanent Link: http://hdl.handle.net/11104/0199758
     
     
  5. 5.
    0334476 - BFÚ 2010 ES eng A - Abstract
    Šponer, Jiří
    RNA based molecular machines and enzymes. Theory and experiment.
    [RNA molekulární stroje a enzymy. Teorie a experiment.]
    Program & Abstracts. Barcelona, 2009. s. 13-14.
    [Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : RNA * molecular dynamics * simulations
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0179195
     
     
  6. 6.
    0332814 - BFÚ 2010 AT eng A - Abstract
    Špačková, Naďa - Šponer, Jiří
    Computer simulations on guanine quadruplexes - focused on loops.
    [Počítačové simulace guaninových kvadruplexů - zaměřeno na smyčky.]
    Abstracts. Ötz Valley, 2009. IL-04.
    [Self-Assembly of Guanosine Derivatives: From Biological Systems to Nanotechnological Applications. 20.06.2009-25.06.2009, Ötz Valley]
    R&D Projects: GA MŠMT(CZ) LC06030
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : molecular dynamics * guanine quadruplex * quadruplex loop
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0177950
     
     
  7. 7.
    0332811 - BFÚ 2010 ES eng A - Abstract
    Réblová, Kamila - Rázga, F. - Li, F. - Gao, W. - Frank, J. - Šponer, Jiří
    Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM.
    [Dynamika základu ribosomálního A-site fingru odkrytá pomocí molekulově dynamických simulací a Cryo-EM.]
    Program & Abstracts. Barcelona, 2009. s. 15.
    [Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : RNA * molecular dynamics * simulations
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0177947
     
     
  8. 8.
    0332770 - BFÚ 2010 ES eng A - Abstract
    Beššeová, Ivana - Réblová, Kamila - Leontis, N.B. - Šponer, Jiří
    Three-way junctions can act as flexible RNA structural elements in large RNA molecules: A molecular simulation analysis.
    [Trojcestná rozhraní RNA mohou fungovat jako flexibilní strukturní elementy RNA ve velkých molekulách RNA: Analýza molekulové simulace.]
    Program & Abstracts. Barcelona, 2009. s. 48.
    [Expanding the frontiers of molecular dynamics simulations in biology. BSC-IRB Joint Conference. 23.11.2009-25.11.2009, Barcelona]
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : RNA * molecular dynamics * simulations
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0177914
     
     
  9. 9.
    0332000 - BFÚ 2010 CZ eng A - Abstract
    Šponer, Jiří
    Structure, dynamics, function of evolution of non-coding RNAs. Computational methods as useful complements of experiments.
    [Struktura, dynamika, funkce a evoluce nekódujících RNA. Počítačové metody jako užitečný doplněk experimentů.]
    Lecture. Brno, 2009. s. 4. ISSN 1214-8598.
    [RNA Club, 7. ročník. 30.10.2009-30.10.2009, Brno]
    Institutional research plan: CEZ:AV0Z50040507; CEZ:AV0Z50040702
    Keywords : RNAs * computational methods * quantum chemistry
    Subject RIV: BO - Biophysics
    Permanent Link: http://hdl.handle.net/11104/0177366
     
     
  10. 10.
    0329967 - ÚOCHB 2010 FR eng A - Abstract
    Vokáčová, Zuzana - Bickelhaupt, F. M. - Šponer, Jiří - Sychrovský, Vladimír
    Structural interpretation of J-coupling constants calculated in guanosine and deoxy-guanosine.
    [Strukturní interpretace J-kaplingů vypočtených v guanosinu a deoxy-guanosinu.]
    13th International Conference on the Applications of Density Functional Theory in Chemistry and Physics. Lyon: -, 2009. s. 101-101.
    [International Conference on the Application of Density Functional Theory in Chemistry and Physics /13./. 31.08.2009-04.09.2009, Lyon]
    Institutional research plan: CEZ:AV0Z40550506
    Keywords : guanosine * J-coupling * DFT
    Subject RIV: CF - Physical ; Theoretical Chemistry
    Permanent Link: http://hdl.handle.net/11104/0175856
     
     

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