Search results
- 1.0576534 - ÚOCHB 2024 RIV US eng J - Journal Article
Kouba, P. - Kohout, P. - Haddadi, F. - Bushuiev, A. - Samusevich, Raman - Sedlář, J. - Damborský, J. - Pluskal, Tomáš - Sivič, J. - Mazurenko, S.
Machine Learning-Guided Protein Engineering.
ACS Catalysis. Roč. 13, č. 21 (2023), s. 13863-13895. ISSN 2155-5435. E-ISSN 2155-5435
R&D Projects: GA ČR(CZ) GM21-11563M; GA MŠMT(CZ) LM2023055; GA MŠMT LX22NPO5102
EU Projects: European Commission(XE) 891397 - KavaTarget
Research Infrastructure: RECETOX RI II - 90269
Institutional support: RVO:61388963
Keywords : activity * artificial intelligence * biocatalysis * deep learning * protein design
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 12.9, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acscatal.3c02743
Permanent Link: https://hdl.handle.net/11104/0346095File Download Size Commentary Version Access 10.1021acscatal.3c02743.pdf 1 3.1 MB Publisher’s postprint open-access - 2.0565346 - ÚOCHB 2023 RIV SE eng J - Journal Article
Musil, M. - Jezik, A. - Jankujova, M. - Stourac, J. - Galgonek, Jakub - Eyrilmez, S.M. - Vondrášek, Jiří - Damborský, J. - Bednář, D.
Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web.
Computational and Structural Biotechnology Journal. Roč. 20, January (2022), s. 6512-6518. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT LX22NPO5102
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388963
Keywords : caver * caverdock * channel * FDA-approved drug * tunnel * virtual screening * web
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 6, year: 2022
Method of publishing: Open access
https://doi.org/10.1016/j.csbj.2022.11.031
Permanent Link: https://hdl.handle.net/11104/0336898File Download Size Commentary Version Access 10.1016j.csbj.2022.11.031.pdf 1 1.6 MB Publisher’s postprint open-access - 3.0557418 - BFÚ 2023 RIV SE eng J - Journal Article
Nikitin, D. - Mican, J. - Toul, J. - Bednar, D. - Pešková, Michaela - Kittová, Patrícia - Thalerová, Sandra - Víteček, Jan - Damborský, J. - Mikulik, R. - Fleishman, S. - Prokop, Z. - Marek, M.
Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin.
Computational and Structural Biotechnology Journal. Roč. 20, MAR 2022 (2022), s. 1366-1377. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68081707
Keywords : angiographic patency trial * recombinant staphylokinase * mechanical stability * ischemic-stroke * activator * fibrin
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022000794?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0339575 - 4.0551558 - ÚEM 2022 RIV FR eng J - Journal Article
Gorecki, L. - Misiachna, Anna - Damborský, J. - Doležal, R. - Korábečný, J. - Čejková, L. - Hakenová, K. - Chvojková, M. - Zdarová Karasová, J. - Prchal, L. - Novák, M. - Kolcheva, Marharyta - Kortus, Štěpán - Valeš, K. - Horák, Martin - Soukup, O.
Structure-activity relationships of dually-acting acetylcholinesterase inhibitors derived from tacrine on N-methyl-D-Aspartate receptors.
European Journal of Medicinal Chemistry. Roč. 219, 5 july (2021), č. článku 113434. ISSN 0223-5234. E-ISSN 1768-3254
R&D Projects: GA ČR(CZ) GA20-12047S; GA TA ČR(CZ) TO01000078
Institutional support: RVO:68378041
Keywords : QSAR * acetylcholinesterase * electrophysiology * glutamate receptor * ion channel * pharmacologyin vivo * tacrine
OECD category: Medicinal chemistry
Impact factor: 7.088, year: 2021
Method of publishing: Open access
https://doi.org/10.1016/j.ejmech.2021.113434
Permanent Link: http://hdl.handle.net/11104/0326821 - 5.0547429 - MBÚ 2022 RIV CH eng J - Journal Article
Shaposhnikova, Anastasiia - Kutý, M. - Chaloupková, R. - Damborský, J. - Smatanová, I.K. - Minofar, Babak - Prudnikova, T.
Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids.
Crystals. Roč. 11, č. 9 (2021), č. článku 1052. ISSN 2073-4352. E-ISSN 2073-4352
R&D Projects: GA MŠMT(CZ) LM2015047
Research Infrastructure: e-INFRA CZ - 90140; RECETOX RI - 90121
Institutional support: RVO:61388971
Keywords : haloalkane dehalogenase (HLD) * ionic liquids (ILs) * molecular dynamics (MD) simulations * protein stability * 2-hydroxyethylammonium acetate ([ETA][ACC]) * 1-butyl-3-methylimidazolium methyl sulfate ([EMIM][CHS])
OECD category: Biophysics
Impact factor: 2.670, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2073-4352/11/9/1052
Permanent Link: http://hdl.handle.net/11104/0323664 - 6.0542659 - FGÚ 2022 RIV FR eng J - Journal Article
Gorecki, L. - Misiachna, Anna - Damborský, J. - Doležal, R. - Korábečný, J. - Čejková, L. - Hakenová, K. - Chvojková, M. - Zdarová Karasová, J. - Prchal, L. - Novák, M. - Kolcheva, Marharyta - Kortus, Štěpán - Valeš, K. - Horák, Martin - Soukup, O.
Structure-activity relationships of dually-acting acetylcholinesterase inhibitors derived from tacrine on N-methyl-d-Aspartate receptors.
European Journal of Medicinal Chemistry. Roč. 219, 5 July (2021), č. článku 113434. ISSN 0223-5234. E-ISSN 1768-3254
R&D Projects: GA MZd(CZ) EF16_025/0007444
Institutional support: RVO:67985823
Keywords : QSAR * acetylcholinesterase * electrophysiology * glutamate receptor * ion channel * pharmacology * in vivo * tacrine
OECD category: Pharmacology and pharmacy
Impact factor: 7.088, year: 2021
Method of publishing: Open access
https://doi.org/10.1016/j.ejmech.2021.113434
Permanent Link: http://hdl.handle.net/11104/0320032 - 7.0539596 - ÚMG 2021 RIV SE eng J - Journal Article
Marek, M. - Chaloupková, R. - Prudnikova, T. - Sato, Y. - Řezáčová, Pavlína - Nagata, Y. - Smatanová, I.K. - Damborský, J.
Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family.
Computational and Structural Biotechnology Journal. Roč. 18, June (2020), s. 1352-1362. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68378050
Keywords : Haloalkane dehalogenase (HLD) * Biocatalysis * Loop-helix transplantation * X-ray crystallography * Enantioselectivity * Access tunnel * Enzyme engineering * Protein design
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302828?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0317304 - 8.0511267 - ÚOCHB 2020 RIV CH eng J - Journal Article
Chrást, L. - Tratsiak, Katsiaryna - Planas-Iglesias, J. - Daniel, L. - Prudnikova, T. - Brezovský, J. - Bednář, D. - Kutá Smatanová, I. - Chaloupková, R. - Damborský, J.
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17.
Microorganisms. Roč. 7, č. 11 (2019), č. článku 498. E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2015047
Institutional support: RVO:61388963
Keywords : haloalkane dehalogenase * thermostability * psychrophile * access tunnel * dimer * catalytic pentad * enantiselectivity
OECD category: Biochemistry and molecular biology
Impact factor: 4.152, year: 2019
Method of publishing: Open access
https://www.mdpi.com/2076-2607/7/11/498
Permanent Link: http://hdl.handle.net/11104/0301587 - 9.0508964 - ÚPT 2020 RIV US eng J - Journal Article
Buryška, T. - Vašina, M. - Gielen, F. - Vaňáček, P. - van Vliet, L. - Ježek, Jan - Pilát, Zdeněk - Zemánek, Pavel - Damborský, J. - Hollfelder, F. - Prokop, Z.
Controlled Oil/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics.
Analytical Chemistry. Roč. 91, č. 15 (2019), s. 10008-10015. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA16-07965S; GA MŠMT ED0017/01/01
Institutional support: RVO:68081731
Keywords : enzyme-kinetics * platform * chip
OECD category: Optics (including laser optics and quantum optics)
Impact factor: 6.785, year: 2019
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.analchem.9b01839
Permanent Link: http://hdl.handle.net/11104/0299794 - 10.0505903 - ÚMG 2020 RIV US eng J - Journal Article
Tratsiak, K. - Prudnikova, Tatyana - Drienovská, I. - Damborský, J. - Brynda, Jiří - Pachl, P. - Kutý, Michal - Chaloupková, R. - Řezáčová, Pavlína - Kutá Smatanová, Ivana
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5.
Acta Crystallographica Section F-Structural Biology Communications. Roč. 75, Pt 5 (2019), s. 324-331. E-ISSN 2053-230X
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : haloalkane dehalogenase * alpha/beta-hydrolase * X-ray diffraction * psychrophiles * structural analysis * Psychrobacter cryohalolentis
OECD category: Biophysics; Biochemistry and molecular biology (MBU-M)
Impact factor: 0.968, year: 2019
Method of publishing: Limited access
http://scripts.iucr.org/cgi-bin/paper?S2053230X19002796
Permanent Link: http://hdl.handle.net/11104/0297526