Search results
- 1.0536178 - ÚFCH JH 2021 RIV US eng J - Journal Article
Olžyńska, Agnieszka - Kulig, W. - Mikkolainen, H. - Czerniak, T. - Jurkiewicz, Piotr - Cwiklik, Lukasz - Rog, T. - Hof, Martin - Jungwirth, Pavel - Vattulainen, I.
Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes.
Langmuir. Roč. 36, č. 35 (2020), s. 10438-10447. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GX19-26854X; GA ČR(CZ) GA18-26751S; GA ČR(CZ) GA17-06792S
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : molecular-dynamics simulations * alkyl chain unsaturation * atom force-field * lipid-bilayer * phospholipids * liposomes * oxidation * translocation * transitions * oxysterols
Subject RIV: CF - Physical ; Theoretical Chemistry; CF - Physical ; Theoretical Chemistry (UOCHB-X)
OBOR OECD: Physical chemistry; Physical chemistry (UOCHB-X)
Impact factor: 3.557, year: 2019
http://hdl.handle.net/11104/0313993
Permanent Link: http://hdl.handle.net/11104/0313993File Download Size Commentary Version Access 0536178.pdf 1 2.6 MB open access Publisher’s postprint open-access - 2.0535901 - ÚOCHB 2021 RIV CH eng J - Journal Article
Liekkinen, J. - de Santos Moreno, B. - Paananen, R. O. - Vattulainen, I. - Monticelli, L. - de la Serna, J. B. - Javanainen, Matti
Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level.
Frontiers in cell and developmental biology. Roč. 8, Nov 16 (2020), č. článku 581016. ISSN 2296-634X
Institutional support: RVO:61388963
Keywords : pulmonary surfactant * lipid monolayer * molecular dynamics simulation * pressure-area isotherm * atomic force microscopy * heterogeneity * membrane domain
Subject RIV: CF - Physical ; Theoretical Chemistry
OBOR OECD: Physical chemistry
Impact factor: 5.201, year: 2019
https://doi.org/10.3389/fcell.2020.581016
Permanent Link: http://hdl.handle.net/11104/0313859 - 3.0523856 - ÚOCHB 2021 RIV GB eng J - Journal Article
Liekkinen, J. - Enkavi, G. - Javanainen, Matti - Olmeda, B. - Pérez-Gil, J. - Vattulainen, I.
Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex.
Journal of Molecular Biology. Roč. 432, č. 10 (2020), s. 3251-3268. ISSN 0022-2836
Institutional support: RVO:61388963
Keywords : pulmonary surfactant * protein–lipid interactions * SP-B * molecular dynamics simulation
Subject RIV: CF - Physical ; Theoretical Chemistry
OBOR OECD: Physical chemistry
Impact factor: 4.760, year: 2019
https://www.sciencedirect.com/science/article/pii/S0022283620302059
Permanent Link: http://hdl.handle.net/11104/0308133 - 4.0517196 - ÚFCH JH 2020 RIV US eng J - Journal Article
Paananen, Riku O. - Javanainen, Matti - Holopainen, J. M. - Vattulainen, I.
Crystalline Wax Esters Regulate the Evaporation Resistance of Tear Film Lipid Layers Associated with Dry Eye Syndrome.
Journal of Physical Chemistry Letters. Roč. 10, č. 14 (2019), s. 3893-3898. ISSN 1948-7185
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : force-field * permeation * water * temperature * meibum * oxygen
Subject RIV: CF - Physical ; Theoretical Chemistry; CF - Physical ; Theoretical Chemistry (UOCHB-X)
OBOR OECD: Physical chemistry; Physical chemistry (UOCHB-X)
Impact factor: 6.710, year: 2019
http://hdl.handle.net/11104/0302485
Permanent Link: http://hdl.handle.net/11104/0302485File Download Size Commentary Version Access 0517196.pdf 0 3.8 MB open access Publisher’s postprint open-access - 5.0509524 - ÚOCHB 2020 RIV DE eng J - Journal Article
Lolicato, F. - Joly, L. - Martinez-Seara, Hector - Fragneto, G. - Scoppola, E. - Baldelli Bombelli, F. - Vattulainen, I. - Akola, J. - Maccarini, M.
The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers.
Small. Roč. 15, č. 23 (2019), č. článku 1805046. ISSN 1613-6810
R&D Projects: GA MŠk(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : gold nanoparticles * lipid membranes * molecular dynamics simulations * nanotoxicity * neutron reflectometry
Subject RIV: CF - Physical ; Theoretical Chemistry
OBOR OECD: Physical chemistry
Impact factor: 11.459, year: 2019
https://onlinelibrary.wiley.com/doi/full/10.1002/smll.201805046
Permanent Link: http://hdl.handle.net/11104/0300251 - 6.0507094 - ÚOCHB 2020 RIV US eng J - Journal Article
Javanainen, Matti - Enkavi, G. - Guixa-González, R. - Kulig, W. - Martinez-Seara, Hector - Levental, I. - Vattulainen, I.
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.
PLoS Computational Biology. Roč. 15, č. 5 (2019), č. článku e1007033. ISSN 1553-7358
R&D Projects: GA MŠk(CZ) EF16_019/0000729
Institutional support: RVO:61388963
Keywords : lipid-protein interactions * A2A adenosine receptor * surface roughness
Subject RIV: CE - Biochemistry
OBOR OECD: Biochemistry and molecular biology
Impact factor: 4.428, year: 2018
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007033
Permanent Link: http://hdl.handle.net/11104/0298164
Research data: Zenodo, Zenodo, Zenodo - 7.0503022 - ÚOCHB 2020 RIV US eng J - Journal Article
Enkavi, G. - Javanainen, Matti - Kulig, W. - Róg, T. - Vattulainen, I.
Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.
Chemical Reviews. Roč. 119, č. 9 (2019), s. 5607-5774. ISSN 0009-2665
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * cellular functions * membrane complexity
Subject RIV: BO - Biophysics
OBOR OECD: Biophysics
Impact factor: 52.758, year: 2019
https://pubs.acs.org/doi/full/10.1021/acs.chemrev.8b00538
Permanent Link: http://hdl.handle.net/11104/0296595 - 8.0502957 - ÚOCHB 2020 RIV US eng J - Journal Article
Gurtovenko, A. A. - Javanainen, Matti - Lolicato, F. - Vattulainen, I.
The Devil Is in the Details: What Do We Really Track in Single-Particle Tracking Experiments of Diffusion in Biological Membranes?
Journal of Physical Chemistry Letters. Roč. 10, č. 5 (2019), s. 1005-1011. ISSN 1948-7185
Institutional support: RVO:61388963
Keywords : lateral diffusion * molecular dynamics simulations * gold nanoparticles
Subject RIV: BO - Biophysics
OBOR OECD: Biophysics
Impact factor: 6.710, year: 2019
https://pubs.acs.org/doi/10.1021/acs.jpclett.9b00065
Permanent Link: http://hdl.handle.net/11104/0296593 - 9.0495905 - ÚOCHB 2019 RIV NL eng J - Journal Article
Mobarak, E. - Javanainen, Matti - Kulig, W. - Honigmann, A. - Sezgin, E. - Aho, N. - Eggeling, Ch. - Rog, T. - Vattulainen, I.
How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative.
Biochimica Et Biophysica Acta-Biomembranes. Roč. 1860, č. 11 (2018), s. 2436-2445. ISSN 0005-2736
Institutional support: RVO:61388963
Keywords : fluorescent probe * PEG linker * lipid membrane * atomistic simulation * molecular dynamics simulation * super-resolution microscopy
Subject RIV: CF - Physical ; Theoretical Chemistry
OBOR OECD: Physical chemistry
Impact factor: 3.790, year: 2018
https://www.sciencedirect.com/science/article/pii/S0005273618301986?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0288779 - 10.0491720 - ÚOCHB 2019 RIV US eng J - Journal Article
Zhou, K. - Dichlberger, A. - Martinez-Seara, Hector - Nyholm, T. K. M. - Li, S. - Kim, Y. A. - Vattulainen, I. - Ikonen, E. - Blom, T.
A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction.
ACS Central Science. Roč. 4, č. 5 (2018), s. 548-558. ISSN 2374-7943
R&D Projects: GA ČR(CZ) GBP208/12/G016
Institutional support: RVO:61388963
Keywords : membrane proteins * transmembrane helix * coupled receptor
Subject RIV: CF - Physical ; Theoretical Chemistry
OBOR OECD: Physical chemistry
Impact factor: 12.837, year: 2018
https://pubs.acs.org/doi/10.1021/acscentsci.7b00582
Permanent Link: http://hdl.handle.net/11104/0285350