Search results
- 1.0582122 - ÚFCH JH 2025 RIV GB eng J - Journal Article
Lolicato, F. - Steringer, J. P. - Saleppico, R. - Beyer, D. - Fernandez-Sobaberas, J. - Unger, S. - Klein, S. - Riegerová, Petra - Wegehingel, S. - Müller, H.-M. - Schmitt, X. J. - Kaptan, S. - Freund, Ch. - Hof, Martin - Šachl, Radek - Chlanda, P. - Vattulainen, I. - Nickel, W.
Disulfide bridge-dependent dimerization triggers FGF2 membrane translocation into the extracellular space.
eLife. Roč. 12, JAN 2024 (2024), č. článku RP88579. ISSN 2050-084X. E-ISSN 2050-084X
R&D Projects: GA ČR(CZ) GC20-01401J
Institutional support: RVO:61388955
Keywords : biochemistry * chemical biology * Protein-protein interaction
OECD category: Physical chemistry
Impact factor: 7.7, year: 2022
Method of publishing: Open access
https://elifesciences.org/articles/88579
Permanent Link: https://hdl.handle.net/11104/0350225File Download Size Commentary Version Access 0582122preprint.pdf 0 13.9 MB open access Author´s preprint open-access - 2.0581631 - ÚOCHB 2025 RIV US eng J - Journal Article
Martin, A. - Tempra, Carmelo - Yu, Y. - Liekkinen, J. - Thakker, R. - Lee, H. - de Santos Moreno, B. - Vattulainen, I. - Rossios, C. - Javanainen, Matti - de la Serna, J. B.
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function.
Environmental Science & Technology Letters. Roč. 58, č. 3 (2024), s. 1495-1508. ISSN 2328-8930
Institutional support: RVO:61388963
Keywords : e-cigarettes * vaping * lung surfactant * inhalationtoxicology * mechanistictoxicology * exposureand human health
Impact factor: 10.9, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.est.3c07874
Permanent Link: https://hdl.handle.net/11104/0349740 - 3.0571957 - ÚOCHB 2024 RIV US eng J - Journal Article
Fábián, Balázs - Vattulainen, I. - Javanainen, Matti
Protein Crowding and Cholesterol Increase Cell Membrane Viscosity in a Temperature Dependent Manner.
Journal of Chemical Theory and Computation. Roč. 19, č. 9 (2023), s. 2630-2643. ISSN 1549-9618. E-ISSN 1549-9626
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * lateral diffusion * force field
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jctc.3c00060
Permanent Link: https://hdl.handle.net/11104/0342809 - 4.0570790 - ÚFCH JH 2024 RIV US eng J - Journal Article
Liekkinen, J. - Olžyńska, Agnieszka - Cwiklik, Lukasz - de la Serna, J. B. - Vattulainen, I. - Javanainen, Matti
Surfactant Proteins SP-B and SP-C in Pulmonary Surfactant Monolayers: Physical Properties Controlled by Specific Protein-Lipid Interactions.
Langmuir. Roč. 39, č. 12 (2023), s. 4338-4350. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GA21-19854S
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : Compression * Isotherms * Lipids
OECD category: Physical chemistry
Impact factor: 3.9, year: 2022
Method of publishing: Open access
Permanent Link: https://hdl.handle.net/11104/0342129File Download Size Commentary Version Access 0570790.pdf 0 8.5 MB open access Publisher’s postprint open-access - 5.0561666 - ÚFCH JH 2023 RIV GB eng J - Journal Article
Ragaller, F. - Andronico, L. - Sýkora, Jan - Kulig, W. - Rog, T. - Urem, Y. B. - Abhinav, Abhinav - Danylchuk, D. I. - Hof, Martin - Klymchenko, A. - Amaro, Mariana - Vattulainen, I. - Sezgin, E.
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.
Open Biology. Roč. 12, č. 9 (2022), č. článku 220175. E-ISSN 2046-2441
R&D Projects: GA ČR(CZ) GX19-26854X
EU Projects: European Commission(XE) 860592 - PROTON
Institutional support: RVO:61388955
Keywords : environment-sensitive probes * spectralimaging * lipid saturation
OECD category: Physical chemistry
Impact factor: 5.8, year: 2022
Method of publishing: Open access
Permanent Link: https://hdl.handle.net/11104/0334190File Download Size Commentary Version Access 0561666.pdf 2 46.5 MB open access Publisher’s postprint open-access - 6.0544836 - ÚMG 2022 RIV GB eng J - Journal Article
Vuorio, J. - Škerlová, Jana - Fábry, Milan - Veverka, V. - Vattulainen, I. - Řezáčová, Pavlína - Martinez-Seara, H.
N-Glycosylation can selectively block or foster different receptor-ligand binding modes.
Scientific Reports. Roč. 11, č. 1 (2021), č. článku 5239. ISSN 2045-2322. E-ISSN 2045-2322
Institutional support: RVO:68378050
Keywords : N-glycosylation * simulations and NMR * importance of glycosylation in protein function
OECD category: Cell biology
Impact factor: 4.997, year: 2021
Method of publishing: Open access
https://www.nature.com/articles/s41598-021-84569-z
Permanent Link: http://hdl.handle.net/11104/0321647 - 7.0541666 - ÚOCHB 2022 RIV US eng J - Journal Article
Souza, P. C.T. - Alessandri, R. - Barnoud, J. - Thallmair, S. - Faustino, I. - Grünewald, F. - Patmanidis, I. - Abdizadeh, H. - Bruininks, B. M.H. - Wassenaar, T. A. - Kroon, P. C. - Melcr, J. - Nieto, V. - Corradi, V. - Khan, H. M. - Domański, J. - Javanainen, Matti - Martinez-Seara, Hector - Reuter, N. - Best, R. B. - Vattulainen, I. - Monticelli, L. - Periole, X. - Tieleman, D. P. - de Vries, A. H. - Marrink, S. J.
Martini 3: a general purpose force field for coarse-grained molecular dynamics.
Nature Methods. Roč. 18, č. 4 (2021), s. 382-388. ISSN 1548-7091. E-ISSN 1548-7105
R&D Projects: GA ČR(CZ) GA19-19561S
Institutional support: RVO:61388963
Keywords : molecular dynamics * coarse-grained model * simulations
OECD category: Physical chemistry
Impact factor: 47.990, year: 2021
Method of publishing: Limited access
https://doi.org/10.1038/s41592-021-01098-3
Permanent Link: http://hdl.handle.net/11104/0319198
Research data: GitHub - 8.0541209 - ÚOCHB 2022 RIV GB eng J - Journal Article
Vuorio, J. - Škerlová, Jana - Fábry, M. - Veverka, Václav - Vattulainen, I. - Řezáčová, Pavlína - Martinez-Seara, Hector
N-Glycosylation can selectively block or foster different receptor–ligand binding modes.
Scientific Reports. Roč. 11, č. 1 (2021), č. článku 5239. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA19-19561S; GA MŠMT(CZ) LO1304
Institutional support: RVO:61388963
Keywords : glycosylation * ligand binding * sugar-protein interaction
OECD category: Biochemistry and molecular biology
Impact factor: 4.997, year: 2021
Method of publishing: Open access
https://doi.org/10.1038/s41598-021-84569-z
Permanent Link: http://hdl.handle.net/11104/0318805 - 9.0536178 - ÚFCH JH 2021 RIV US eng J - Journal Article
Olžyńska, Agnieszka - Kulig, W. - Mikkolainen, H. - Czerniak, T. - Jurkiewicz, Piotr - Cwiklik, Lukasz - Rog, T. - Hof, Martin - Jungwirth, Pavel - Vattulainen, I.
Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes.
Langmuir. Roč. 36, č. 35 (2020), s. 10438-10447. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GX19-26854X; GA ČR(CZ) GA18-26751S; GA ČR(CZ) GA17-06792S
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : molecular-dynamics simulations * alkyl chain unsaturation * atom force-field * lipid-bilayer * phospholipids * liposomes * oxidation * translocation * transitions * oxysterols
OECD category: Physical chemistry; Physical chemistry (UOCHB-X)
Impact factor: 3.882, year: 2020
Method of publishing: Open access
Permanent Link: http://hdl.handle.net/11104/0313993File Download Size Commentary Version Access 0536178.pdf 3 2.6 MB open access Publisher’s postprint open-access - 10.0535901 - ÚOCHB 2021 RIV CH eng J - Journal Article
Liekkinen, J. - de Santos Moreno, B. - Paananen, R. O. - Vattulainen, I. - Monticelli, L. - de la Serna, J. B. - Javanainen, Matti
Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level.
Frontiers in Cell and Developmental Biology. Roč. 8, Nov 16 (2020), č. článku 581016. ISSN 2296-634X. E-ISSN 2296-634X
Institutional support: RVO:61388963
Keywords : pulmonary surfactant * lipid monolayer * molecular dynamics simulation * pressure-area isotherm * atomic force microscopy * heterogeneity * membrane domain
OECD category: Physical chemistry
Impact factor: 6.684, year: 2020
Method of publishing: Open access
https://doi.org/10.3389/fcell.2020.581016
Permanent Link: http://hdl.handle.net/11104/0313859