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  1. 1.
    0536178 - ÚFCH JH 2021 RIV US eng J - Journal Article
    Olžyńska, Agnieszka - Kulig, W. - Mikkolainen, H. - Czerniak, T. - Jurkiewicz, Piotr - Cwiklik, Lukasz - Rog, T. - Hof, Martin - Jungwirth, Pavel - Vattulainen, I.
    Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes.
    Langmuir. Roč. 36, č. 35 (2020), s. 10438-10447. ISSN 0743-7463
    R&D Projects: GA ČR(CZ) GX19-26854X; GA ČR(CZ) GA18-26751S; GA ČR(CZ) GA17-06792S
    Institutional support: RVO:61388955 ; RVO:61388963
    Keywords : molecular-dynamics simulations * alkyl chain unsaturation * atom force-field * lipid-bilayer * phospholipids * liposomes * oxidation * translocation * transitions * oxysterols
    Subject RIV: CF - Physical ; Theoretical Chemistry; CF - Physical ; Theoretical Chemistry (UOCHB-X)
    OBOR OECD: Physical chemistry; Physical chemistry (UOCHB-X)
    Impact factor: 3.557, year: 2019
    http://hdl.handle.net/11104/0313993
    Permanent Link: http://hdl.handle.net/11104/0313993
    FileDownloadSizeCommentaryVersionAccess
    0536178.pdf12.6 MBopen accessPublisher’s postprintopen-access
     
  2. 2.
    0535901 - ÚOCHB 2021 RIV CH eng J - Journal Article
    Liekkinen, J. - de Santos Moreno, B. - Paananen, R. O. - Vattulainen, I. - Monticelli, L. - de la Serna, J. B. - Javanainen, Matti
    Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level.
    Frontiers in cell and developmental biology. Roč. 8, Nov 16 (2020), č. článku 581016. ISSN 2296-634X
    Institutional support: RVO:61388963
    Keywords : pulmonary surfactant * lipid monolayer * molecular dynamics simulation * pressure-area isotherm * atomic force microscopy * heterogeneity * membrane domain
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 5.201, year: 2019
    https://doi.org/10.3389/fcell.2020.581016
    Permanent Link: http://hdl.handle.net/11104/0313859
     
  3. 3.
    0523856 - ÚOCHB 2021 RIV GB eng J - Journal Article
    Liekkinen, J. - Enkavi, G. - Javanainen, Matti - Olmeda, B. - Pérez-Gil, J. - Vattulainen, I.
    Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex.
    Journal of Molecular Biology. Roč. 432, č. 10 (2020), s. 3251-3268. ISSN 0022-2836
    Institutional support: RVO:61388963
    Keywords : pulmonary surfactant * protein–lipid interactions * SP-B * molecular dynamics simulation
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 4.760, year: 2019
    https://www.sciencedirect.com/science/article/pii/S0022283620302059
    Permanent Link: http://hdl.handle.net/11104/0308133
     
  4. 4.
    0517196 - ÚFCH JH 2020 RIV US eng J - Journal Article
    Paananen, Riku O. - Javanainen, Matti - Holopainen, J. M. - Vattulainen, I.
    Crystalline Wax Esters Regulate the Evaporation Resistance of Tear Film Lipid Layers Associated with Dry Eye Syndrome.
    Journal of Physical Chemistry Letters. Roč. 10, č. 14 (2019), s. 3893-3898. ISSN 1948-7185
    Institutional support: RVO:61388955 ; RVO:61388963
    Keywords : force-field * permeation * water * temperature * meibum * oxygen
    Subject RIV: CF - Physical ; Theoretical Chemistry; CF - Physical ; Theoretical Chemistry (UOCHB-X)
    OBOR OECD: Physical chemistry; Physical chemistry (UOCHB-X)
    Impact factor: 6.710, year: 2019
    http://hdl.handle.net/11104/0302485
    Permanent Link: http://hdl.handle.net/11104/0302485
    FileDownloadSizeCommentaryVersionAccess
    0517196.pdf03.8 MBopen accessPublisher’s postprintopen-access
     
  5. 5.
    0509524 - ÚOCHB 2020 RIV DE eng J - Journal Article
    Lolicato, F. - Joly, L. - Martinez-Seara, Hector - Fragneto, G. - Scoppola, E. - Baldelli Bombelli, F. - Vattulainen, I. - Akola, J. - Maccarini, M.
    The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers.
    Small. Roč. 15, č. 23 (2019), č. článku 1805046. ISSN 1613-6810
    R&D Projects: GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388963
    Keywords : gold nanoparticles * lipid membranes * molecular dynamics simulations * nanotoxicity * neutron reflectometry
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 11.459, year: 2019
    https://onlinelibrary.wiley.com/doi/full/10.1002/smll.201805046
    Permanent Link: http://hdl.handle.net/11104/0300251
     
  6. 6.
    0507094 - ÚOCHB 2020 RIV US eng J - Journal Article
    Javanainen, Matti - Enkavi, G. - Guixa-González, R. - Kulig, W. - Martinez-Seara, Hector - Levental, I. - Vattulainen, I.
    Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.
    PLoS Computational Biology. Roč. 15, č. 5 (2019), č. článku e1007033. ISSN 1553-7358
    R&D Projects: GA MŠk(CZ) EF16_019/0000729
    Institutional support: RVO:61388963
    Keywords : lipid-protein interactions * A2A adenosine receptor * surface roughness
    Subject RIV: CE - Biochemistry
    OBOR OECD: Biochemistry and molecular biology
    Impact factor: 4.428, year: 2018
    https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007033
    Permanent Link: http://hdl.handle.net/11104/0298164

    Research data: Zenodo, Zenodo, Zenodo
     
  7. 7.
    0503022 - ÚOCHB 2020 RIV US eng J - Journal Article
    Enkavi, G. - Javanainen, Matti - Kulig, W. - Róg, T. - Vattulainen, I.
    Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.
    Chemical Reviews. Roč. 119, č. 9 (2019), s. 5607-5774. ISSN 0009-2665
    Institutional support: RVO:61388963
    Keywords : molecular dynamics simulations * cellular functions * membrane complexity
    Subject RIV: BO - Biophysics
    OBOR OECD: Biophysics
    Impact factor: 52.758, year: 2019
    https://pubs.acs.org/doi/full/10.1021/acs.chemrev.8b00538
    Permanent Link: http://hdl.handle.net/11104/0296595
     
  8. 8.
    0502957 - ÚOCHB 2020 RIV US eng J - Journal Article
    Gurtovenko, A. A. - Javanainen, Matti - Lolicato, F. - Vattulainen, I.
    The Devil Is in the Details: What Do We Really Track in Single-Particle Tracking Experiments of Diffusion in Biological Membranes?
    Journal of Physical Chemistry Letters. Roč. 10, č. 5 (2019), s. 1005-1011. ISSN 1948-7185
    Institutional support: RVO:61388963
    Keywords : lateral diffusion * molecular dynamics simulations * gold nanoparticles
    Subject RIV: BO - Biophysics
    OBOR OECD: Biophysics
    Impact factor: 6.710, year: 2019
    https://pubs.acs.org/doi/10.1021/acs.jpclett.9b00065
    Permanent Link: http://hdl.handle.net/11104/0296593
     
  9. 9.
    0495905 - ÚOCHB 2019 RIV NL eng J - Journal Article
    Mobarak, E. - Javanainen, Matti - Kulig, W. - Honigmann, A. - Sezgin, E. - Aho, N. - Eggeling, Ch. - Rog, T. - Vattulainen, I.
    How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative.
    Biochimica Et Biophysica Acta-Biomembranes. Roč. 1860, č. 11 (2018), s. 2436-2445. ISSN 0005-2736
    Institutional support: RVO:61388963
    Keywords : fluorescent probe * PEG linker * lipid membrane * atomistic simulation * molecular dynamics simulation * super-resolution microscopy
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 3.790, year: 2018
    https://www.sciencedirect.com/science/article/pii/S0005273618301986?via%3Dihub
    Permanent Link: http://hdl.handle.net/11104/0288779
     
  10. 10.
    0491720 - ÚOCHB 2019 RIV US eng J - Journal Article
    Zhou, K. - Dichlberger, A. - Martinez-Seara, Hector - Nyholm, T. K. M. - Li, S. - Kim, Y. A. - Vattulainen, I. - Ikonen, E. - Blom, T.
    A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction.
    ACS Central Science. Roč. 4, č. 5 (2018), s. 548-558. ISSN 2374-7943
    R&D Projects: GA ČR(CZ) GBP208/12/G016
    Institutional support: RVO:61388963
    Keywords : membrane proteins * transmembrane helix * coupled receptor
    Subject RIV: CF - Physical ; Theoretical Chemistry
    OBOR OECD: Physical chemistry
    Impact factor: 12.837, year: 2018
    https://pubs.acs.org/doi/10.1021/acscentsci.7b00582
    Permanent Link: http://hdl.handle.net/11104/0285350