Search results
- 1.0542712 - MBÚ 2022 RIV CH eng J - Journal Article
Piwosz, Kasia - Mukherjee, Indranil - Salcher, Michaela M. - Grujcic, V. - Šimek, Karel
CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology.
Frontiers in Microbiology. Roč. 12, MAR 4 2021 (2021), č. článku 640066. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : aquatic microbial food webs * card-fish * grazing by protists * protists * unicellular eukaryotes * bacterivorous * omnivorous and predatory flagellates * heterotrophic and mixotrophic flagellates
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 6.064, year: 2021
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full
Permanent Link: http://hdl.handle.net/11104/0320081 - 2.0538633 - BC 2021 RIV GB eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Mukherjee, Indranil - Kasalický, Vojtěch - Nedoma, Jiří - Posch, T. - Mehrshad, Maliheh - Salcher, Michaela M.
Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes.
FEMS Microbiology Ecology. Roč. 96, č. 10 (2020), č. článku fiaa121. ISSN 0168-6496. E-ISSN 1574-6941
R&D Projects: GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : ciliates * bacterivorous and predatory flagellates * Cercozoa * Cryptophyceae * freshwater microbial food webs * Katablepharidacea
OECD category: Ecology
Impact factor: 4.194, year: 2020
Method of publishing: Open access
https://doi.org/10.1093/femsec/fiaa121
Permanent Link: http://hdl.handle.net/11104/0316400File Download Size Commentary Version Access SIMEK FEMS Microbiol Ecol 2020.pdf 0 3.9 MB Author´s preprint open-access - 3.0510316 - BC 2020 RIV US eng J - Journal Article
Šimek, Karel - Sirová, Dagmara
Fluorescently Labeled Bacteria as a Tracer to Reveal Novel Pathways of Organic Carbon Flow in Aquatic Ecosystems.
Jove-Journal of Visualized Experiments. Roč. 151, Sep (2019), č. článku e59903. ISSN 1940-087X
R&D Projects: GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-16554S; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : environmental sciences * aquatic microbial food webs * carbon
OECD category: Microbiology
Impact factor: 1.163, year: 2019
Method of publishing: Limited access
https://www.jove.com/video/59903/fluorescently-labeled-bacteria-as-tracer-to-reveal-novel-pathways
Permanent Link: http://hdl.handle.net/11104/0301298 - 4.0397010 - BC 2014 CZ cze B - Monography
Rulík, M. - Baudišová, D. - Růžička, J. - Šimek, Karel
Mikrobiální ekologie vod.
[Aquatic mnicrobial ecology (textbook).]
Olomouc: Univerzita Palackého v Olomouci, 2013. 292 s. Skripta. ISBN 978-80-244-3477-3
Institutional support: RVO:60077344
Keywords : freshwater * microbial ecology * microbial growth * microbial food webs
Subject RIV: EE - Microbiology, Virology
Permanent Link: http://hdl.handle.net/11104/0224662 - 5.0150575 - HBU-Z 20033062 RIV NL eng J - Journal Article
Mašín, Michal - Jezbera, Jan - Nedoma, Jiří - Straškrábová, Viera - Hejzlar, Josef - Šimek, Karel
Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading.
Hydrobiologia. Roč. 504, - (2003), s. 99-113. ISSN 0018-8158. E-ISSN 1573-5117.
[Reservoir Limnology and Water Quality /4./. České Budějovice, 12.08.2002-16.08.2002]
R&D Projects: GA ČR GA206/99/0028; GA ČR GA206/02/0003
Institutional research plan: CEZ:AV0Z6017912
Keywords : reservoirs * microbial food webs * bacterial production and community composition
Subject RIV: EE - Microbiology, Virology
Impact factor: 0.720, year: 2003
Permanent Link: http://hdl.handle.net/11104/0048105 - 6.0150574 - HBU-Z 20033061 RIV NL eng J - Journal Article
Comerma, M. - García, J. C. - Romero, M. - Armengol, J. - Šimek, Karel
Carbon flow dynamics in the pelagic community of the Sau Reservoir (Catalonia, NE Spain).
Hydrobiologia. Roč. 504, - (2003), s. 87-98. ISSN 0018-8158. E-ISSN 1573-5117.
[Reservoir Limnology and Water Quality /4./. České Budějovice, 12.08.2002-16.08.2002]
Institutional research plan: CEZ:AV0Z6017912
Keywords : reservoir * longitudinal plankton succession * carbon flow through microbial food webs
Subject RIV: EE - Microbiology, Virology
Impact factor: 0.720, year: 2003
Permanent Link: http://hdl.handle.net/11104/0048104 - 7.0150524 - HBU-Z 20033011 RIV DE eng J - Journal Article
Šimek, Karel - Horňák, K. - Mašín, M. - Christaki, U. - Nedoma, Jiří - Weinbauer, M. G. - Dolan, J. R.
Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir.
Aquatic Microbial Ecology. Roč. 31, č. 2 (2003), s. 123-135. ISSN 0948-3055. E-ISSN 1616-1564
R&D Projects: GA ČR GA206/99/0028; GA ČR GA206/02/0003; GA MŠMT KONTAKT 22-2000/9513514
Grant - others:CNRS(FR) PICS 1111
Institutional research plan: CEZ:MSM 123100004
Keywords : reservoir * top-down and bottom-up control * microbial food webs
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.116, year: 2003
Permanent Link: http://hdl.handle.net/11104/0048056 - 8.0150370 - HBU-Z 20013095 RIV US eng J - Journal Article
Šimek, Karel - Armengol, J. - Comerma, M. - Garcia, J. C. - Kojecká, P. - Nedoma, Jiří - Hejzlar, Josef
Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir.
Microbial Ecology. Roč. 42, - (2001), s. 359-371. ISSN 0095-3628. E-ISSN 1432-184X
R&D Projects: GA ČR GA206/99/0028; GA ČR GA206/98/0727; GA AV ČR IPP1011802
Grant - others:SIMCST(ES) CICYT HID99-599-CO2-O1
Institutional research plan: CEZ:AV0Z6017912
Keywords : bacterial community composition * eutrophic reservoir * microbial food webs
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.891, year: 2001
Permanent Link: http://hdl.handle.net/11104/0047908 - 9.0104282 - HBU-Z 20043017 RIV DE eng J - Journal Article
Šimek, Karel - Jezbera, Jan - Horňák, Karel - Vrba, Jaroslav - Seďa, Jaromír
Role of diatom-attached choanoflagellates of the genus Salpingoeca as pelagic bacterivores.
[Role přisedlých choanoflagelátů rodu Salpingoeca jako konzumentů bakterioplanktonu.]
Aquatic Microbial Ecology. Roč. 36, č. 3 (2004), s. 257-269. ISSN 0948-3055. E-ISSN 1616-1564
R&D Projects: GA ČR(CZ) GA206/02/0003
Keywords : reservoir * microbial food webs * protistan bacterivory
Subject RIV: EE - Microbiology, Virology
Impact factor: 2.255, year: 2004
Permanent Link: http://hdl.handle.net/11104/0011556 - 10.0024837 - HBU-Z 2006 RIV US eng J - Journal Article
Šimek, Karel - Horňák, Karel - Jezbera, Jan - Mašín, Michal - Nedoma, Jiří - Gasol, J. M. . - Schauer, M.
Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of Betaproteobacteria, an abundant group in bacterioplankton of a freshwater reservoir.
[Vliv pokusných manipulací s dostupností substrátu a intenzitou predace na dynamiku početné podskupiny bakterioplanktonu (podskupina R-BT065 z Betaproteobacteria) přehradní nádrže.]
Applied and Environmental Microbiology. Roč. 71, č. 5 (2005), s. 2381-2390. ISSN 0099-2240. E-ISSN 1098-5336
R&D Projects: GA ČR(CZ) GA206/05/0007; GA ČR(CZ) GA206/02/0003
Grant - others:CSIC(ES) DGICYT REN2001-2120/MAR; EU(XE) EVK3-CT-2002-00078; Austrian Science Foundation(AT) P15655
Institutional research plan: CEZ:AV0Z60170517
Keywords : reservoir * top-down and bottom-up control * microbial food webs * bacterivory * bacterial community composition
Subject RIV: EE - Microbiology, Virology
Impact factor: 3.818, year: 2005
Permanent Link: http://hdl.handle.net/11104/0115319