Search results
- 1.0571534 - BFÚ 2024 RIV NL eng J - Journal Article
Weidner, J. - Neitzel, Ch. - Gote, M. - Deck, J. - Kuentzelmann, K. - Pilarczyk, G. - Falk, Martin - Hausmann, M.
Advanced image-free analysis of the nano-organization of chromatin and other biomolecules by Single Molecule Localization Microscopy (SMLM).
Computational and Structural Biotechnology Journal. Roč. 21, MAR 2023 (2023), s. 2018-2034. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR GC20-04109J
Institutional support: RVO:68081707
Keywords : Single molecule localization microscopy * (smlm) * Ripley distance frequency histograms * Persistent homology * Persistent image * Principal component analysis * Application of mathematical analysis tools to * chromatin organization and DNA repair * processes
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037023001083?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0349895 - 2.0571383 - FGÚ 2024 RIV NL eng J - Journal Article
Masaryk, Jakub - Kale, Deepika - Pohl, Pavel - Ruiz-Castilla, F. J. - Zimmermannová, Olga - Obšilová, Veronika - Ramos, J. - Sychrová, Hana
The second intracellular loop of the yeast Trk1 potassium transporter is involved in regulation of activity, and interaction with 14–3-3 proteins.
Computational and Structural Biotechnology Journal. Roč. 21, April (2023), s. 2705-2716. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-04420S; GA ČR(CZ) GA21-08985S; GA MŠMT(CZ) LTC20005
Institutional support: RVO:67985823
Keywords : potassium ion uptake * Saccharomyces cerevisiae * phosphorylation * Trk1 * 14–3–3 proteins
OECD category: Microbiology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://doi.org/10.1016/j.csbj.2023.04.019
Permanent Link: https://hdl.handle.net/11104/0342627 - 3.0570259 - ÚFE 2024 RIV NL eng J - Journal Article
Průša, Jiří - Cifra, Michal
Electro-detachment of kinesin motor domain from microtubule in silico.
Computational and Structural Biotechnology Journal. Roč. 21, FEB 2023 (2023), s. 1349-1361. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GX20-06873X
Grant - others:Ministerstvo školství, mládeže a tělovýchovy - GA MŠk(CZ) LM2018140
Institutional support: RVO:67985882
Keywords : Electric field * Proteins * Tubulin * Microtubules * Molecular dynamics simulation
OECD category: Biophysics
Impact factor: 6, year: 2022
Method of publishing: Limited access
Permanent Link: https://hdl.handle.net/11104/0345167File Download Size Commentary Version Access UFE 0570259.pdf 3 7 MB Other require Scientific data in ASEP :
Raw data for the paper Molecular dynamics simulation trajectories dataset of a kinesin on tubulin heterodimers in electric field A2103 - 4.0569718 - BFÚ 2024 RIV NL eng J - Journal Article
Veverka, Pavel - Brom, T. - Janovic, T. - Stojaspal, Martin - Pinkas, M. - Nováček, J. - Hofr, C.
Electron microscopy reveals toroidal shape of master neuronal cell differentiator REST RE1-silencing transcription factor.
Computational and Structural Biotechnology Journal. Roč. 21, JAN 2023 (2023), s. 731-741. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68081707
Keywords : rest * RE1-silencing transcription factor * Neuron-restrictive silencer factor * Neuronal * Differentiation * rest-n62 * rest4 * nrsf * em * Electron microscopy
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.csbj.org/action/showPdf?pii=S2001-0370%2822%2900582-7
Permanent Link: https://hdl.handle.net/11104/0344342 - 5.0567811 - BC 2023 RIV SE eng J - Journal Article
Gerasimov, E. S. - Afonin, D.A. - Korzhavina, O.A. - Lukeš, Julius - Low, R. - Hall, N. - Tyler, K. - Yurchenko, V. - Zimmer, S.L.
Mitochondrial RNA editing in Trypanoplasma borreli: New tools, new revelations.
Computational and Structural Biotechnology Journal. Roč. 20, NOV (2022), s. 6388-6402. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA22-01026S
Institutional support: RVO:60077344
Keywords : ATPase 6 * Euglenozoa * guide RNA * Maxicircle * Metakinetoplastina * Mitochondrion * RNA editing
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022005177?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0339051 - 6.0567744 - MBÚ 2024 RIV NL eng J - Journal Article
Masuda, Takako - Inomura, K. - Gao, M. - Armin, G. - Kotabová, Eva - Bernát, Gábor - Lawrenz-Kendrick, Evelyn - Lukeš, Martin - Bečková, Martina - Steinbach, Gabor - Komenda, Josef - Prášil, Ondřej
The balance between photosynthesis and respiration explains the niche differentiation between Crocosphaera and Cyanothece.
Computational and Structural Biotechnology Journal. Roč. 21, January 23 (2023), s. 58-65. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-17627S; GA ČR(CZ) GX19-29225X
Institutional support: RVO:61388971
Keywords : ucyn-b * ucyn-c * Niche separation * Carbon consumption
OECD category: Microbiology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022005256?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0342540 - 7.0565346 - ÚOCHB 2023 RIV SE eng J - Journal Article
Musil, M. - Jezik, A. - Jankujova, M. - Stourac, J. - Galgonek, Jakub - Eyrilmez, S.M. - Vondrášek, Jiří - Damborský, J. - Bednář, D.
Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web.
Computational and Structural Biotechnology Journal. Roč. 20, January (2022), s. 6512-6518. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT LX22NPO5102
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388963
Keywords : caver * caverdock * channel * FDA-approved drug * tunnel * virtual screening * web
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 6, year: 2022
Method of publishing: Open access
https://doi.org/10.1016/j.csbj.2022.11.031
Permanent Link: https://hdl.handle.net/11104/0336898File Download Size Commentary Version Access 10.1016j.csbj.2022.11.031.pdf 1 1.6 MB Publisher’s postprint open-access - 8.0559398 - BC 2023 RIV SE eng J - Journal Article
Selinger, Martin - Věchtová, P. - Tykalová, Hana - Oslejskova, P. - Rumlová, M. - Štěrba, J. - Grubhoffer, Libor
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors.
Computational and Structural Biotechnology Journal. Roč. 20, JUN (2022), s. 2759-2777. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA MŠMT(CZ) LTARF18021; GA ČR(CZ) GA18-27204S
Institutional support: RVO:60077344
Keywords : Alternative splicing * Astrocytes * miRNA * Neurons * Response to infection * Neuropathogenesis * Tick-borne encephalitis virus * Transcriptomics
OECD category: Microbiology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022002070?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340284 - 9.0557418 - BFÚ 2023 RIV SE eng J - Journal Article
Nikitin, D. - Mican, J. - Toul, J. - Bednar, D. - Pešková, Michaela - Kittová, Patrícia - Thalerová, Sandra - Víteček, Jan - Damborský, J. - Mikulik, R. - Fleishman, S. - Prokop, Z. - Marek, M.
Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin.
Computational and Structural Biotechnology Journal. Roč. 20, MAR 2022 (2022), s. 1366-1377. ISSN 2001-0370. E-ISSN 2001-0370
Institutional support: RVO:68081707
Keywords : angiographic patency trial * recombinant staphylokinase * mechanical stability * ischemic-stroke * activator * fibrin
OECD category: Biochemistry and molecular biology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037022000794?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0339575 - 10.0557248 - MBÚ 2023 RIV SE eng J - Journal Article
Malych, R. - Stopka, P. - Mach, J. - Kotabová, Eva - Prášil, Ondřej - Suták, R.
Flow cytometry-based study of model marine microalgal consortia revealed an ecological advantage of siderophore utilization by the dinoflagellate Amphidinium carterae.
Computational and Structural Biotechnology Journal. Roč. 20, č. 2022 (2022), s. 287-295. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA18-07822S
Institutional support: RVO:61388971
Keywords : iron * phytoplankton * responses * limitation * transport * growth * Amphidinium carterae * Flow cytometry * Iron * Marine microalgae * Proteomics * Siderophores
OECD category: Microbiology
Impact factor: 6, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037021005328?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0331407