Search results

  1. 1.
    0583805 - BC 2024 RIV GB eng J - Journal Article
    Kavagutti, Vinicius Silva - Bulzu, Paul-Adrian - Chiriac, Maria-Cecilia - Salcher, Michaela M. - Mukherjee, Indranil - Shabarova, Tatiana - Grujčič, Vesna - Mehrshad, Maliheh - Kasalický, Vojtěch - Andrei, A.S. - Jezberová, Jitka - Seďa, Jaromír - Rychtecký, Pavel - Znachor, Petr - Šimek, Karel - Ghai, Rohit
    High-resolution metagenomic reconstruction of the freshwater spring bloom.
    Microbiome. Roč. 11, č. 1 (2023), č. článku 15. ISSN 2049-2618. E-ISSN 2049-2618
    R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA21-21990S; GA ČR(CZ) GA19-23469S; GA ČR GA22-03662S; GA ČR(CZ) GA19-23261S; GA MŠMT(CZ) EF16_025/0007417
    Institutional support: RVO:60077344
    Keywords : bacterioplankton populations * seasonal succession * giant virus * chrysochromulina
    OECD category: Microbiology
    Impact factor: 15.5, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1186/s40168-022-01451-4
    Permanent Link: https://hdl.handle.net/11104/0351803
     
     
  2. 2.
    0583794 - BC 2024 RIV GB eng J - Journal Article
    Park, Hongjae - Shabarova, Tatiana - Salcher, Michaela M. - Kosová, Lenka - Rychtecký, Pavel - Mukherjee, Indranil - Šimek, Karel - Porcal, Petr - Seďa, Jaromír - Znachor, Petr - Kasalický, Vojtěch
    In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model.
    Microbiome. Roč. 11, č. 1 (2023), č. článku 112. ISSN 2049-2618. E-ISSN 2049-2618
    R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GA19-00113S; GA MŠMT(CZ) EF16_025/0007417; GA ČR GA22-33245S; GA ČR GF22-35826K
    Institutional support: RVO:60077344
    Keywords : rna gene-sequences * niche separation * Freshwater reservoirs * Microbial communities * Spatiotemporal dynamics * Microdiversity * PEG model
    OECD category: Microbiology
    Impact factor: 15.5, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1186/s40168-023-01522-0
    Permanent Link: https://hdl.handle.net/11104/0351793
     
     
  3. 3.
    0583665 - BC 2024 RIV GB eng J - Journal Article
    Šimek, Karel - Mukherjee, Indranil - Szoke-Nagy, Tiberiu - Haber, Markus - Salcher, Michaela M. - Ghai, Rohit
    Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores.
    The ISME Journal. Roč. 17, č. 1 (2023), s. 84-94. ISSN 1751-7362. E-ISSN 1751-7370
    R&D Projects: GA ČR(CZ) GA21-21990S; GA ČR(CZ) GX20-12496X; GA ČR GF22-35826K; GA MŠMT(CZ) EF16_025/0007417
    Institutional support: RVO:60077344
    Keywords : protists * sequence * marine * cryptomonas * paramecium
    OECD category: Marine biology, freshwater biology, limnology
    Impact factor: 11, year: 2022
    Method of publishing: Open access
    https://doi.org/10.1038/s41396-022-01326-4
    Permanent Link: https://hdl.handle.net/11104/0351690
     
     
  4. 4.
    0561632 - BC 2023 RIV GB eng J - Journal Article
    Šimek, Karel - Mukherjee, Indranil - Nedoma, Jiří - Paula, Caio César Pires de - Jezberová, Jitka - Sirová, Dagmara - Vrba, Jaroslav
    CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes.
    Environmental Microbiology. Roč. 24, č. 9 (2022), s. 4256-4273. ISSN 1462-2912. E-ISSN 1462-2920
    R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-16554S; GA ČR(CZ) GA19-23261S
    Institutional support: RVO:60077344
    Keywords : Protista * Bacteria * Flagellate
    OECD category: Microbiology
    Impact factor: 5.1, year: 2022
    Method of publishing: Limited access
    https://doi.org/10.1111/1462-2920.15846
    Permanent Link: https://hdl.handle.net/11104/0340269
     
     
  5. 5.
    0557051 - BC 2023 RIV GB eng J - Journal Article
    Prokopchuk, Galina - Korytář, Tomáš - Juricová, Valéria - Majstorović, Jovana - Horák, Aleš - Šimek, Karel - Lukeš, Julius
    Trophic flexibility of marine diplonemids-switching from osmotrophy to bacterivory.
    The ISME Journal. Roč. 16, č. 5 (2022), s. 1409-1419. ISSN 1751-7362. E-ISSN 1751-7370
    R&D Projects: GA ČR(CZ) GA18-23787S; GA MŠMT(CZ) LL1601; GA MŠMT(CZ) EF16_019/0000759; GA MŠMT(CZ) EF16_025/0007417
    Grant - others:Gordon and Betty Moore Foundation(US) #9354
    Program: Science
    Institutional support: RVO:60077344
    Keywords : microbial food-web * fresh-water * ambulator larsen * protists * flagellate * phylogeny * diversity * predation * patterson * reservoir
    OECD category: Marine biology, freshwater biology, limnology
    Impact factor: 11, year: 2022
    Method of publishing: Limited access
    https://www.nature.com/articles/s41396-022-01192-0
    Permanent Link: https://hdl.handle.net/11104/0340212
     
     
  6. 6.
    0552459 - BC 2022 RIV GB eng J - Journal Article
    Sagová-Marečková, M. - Boenigk, J. - Bouchez, A. - Cermakova, K. - Chonova, T. - Cordier, T. - Eisendle, U. - Elersek, T. - Fazi, S. - Fleituch, T. - Frühe, L. - Gajdosova, M. - Graupner, N. - Haegerbaeumer, A. - Kelly, A.-M. - Kopecký, J. - Leese, F. - Nõges, P. - Orlic, S. - Panksep, K. - Pawlowski, J. - Petrusek, A. - Piggott, J.J. - Rusch, J.C. - Salis, R. - Schenk, J. - Šimek, Karel - Šťovíček, A. - Strand, D.A. - Vasquez, M.I. - Vralstad, T. - Zlatkovic, S. - Zupancic, M. - Stoeck, T.
    Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring.
    Water Research. Roč. 191, 1 March 2021 (2021), č. článku 116767. ISSN 0043-1354. E-ISSN 1879-2448
    Institutional support: RVO:60077344
    Keywords : sulfate-reducing bacteria * microbial community composition * antibiotic-resistance genes * waste-water * nitrogen-fixation * quantitative pcr * biotic integrity * next-generation * phytoplankton composition * cyanobacterial community
    OECD category: Microbiology
    Impact factor: 13.400, year: 2021
    Method of publishing: Open access
    https://doi.org/10.1016/j.watres.2020.116767
    Permanent Link: http://hdl.handle.net/11104/0327583
     
     
  7. 7.
    0552451 - BC 2022 RIV GB eng J - Journal Article
    Shabarova, Tatiana - Salcher, Michaela M. - Porcal, Petr - Znachor, Petr - Nedoma, Jiří - Grossart, H.P. - Seďa, Jaromír - Hejzlar, Josef - Šimek, Karel
    Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession.
    Nature Microbiology. Roč. 6, č. 4 (2021), s. 479-+. ISSN 2058-5276. E-ISSN 2058-5276
    R&D Projects: GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
    Institutional support: RVO:60077344
    Keywords : dissolved organic-matter * ribosomal-rna * peg-model * lake * assemblages * phosphorus * projections * reservoirs * emissions * silva
    OECD category: Microbiology
    Impact factor: 30.964, year: 2021
    Method of publishing: Limited access
    https://doi.org/10.1038/s41564-020-00852-1
    Permanent Link: http://hdl.handle.net/11104/0327580
    FileDownloadSizeCommentaryVersionAccess
    SHABAROVA NatureMicrobiol 2021.pdf013.8 MBAuthor´s preprintrequire
     
     
  8. 8.
    0542712 - MBÚ 2022 RIV CH eng J - Journal Article
    Piwosz, Kasia - Mukherjee, Indranil - Salcher, Michaela M. - Grujcic, V. - Šimek, Karel
    CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology.
    Frontiers in Microbiology. Roč. 12, MAR 4 2021 (2021), č. článku 640066. ISSN 1664-302X. E-ISSN 1664-302X
    R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S
    Institutional support: RVO:61388971 ; RVO:60077344
    Keywords : aquatic microbial food webs * card-fish * grazing by protists * protists * unicellular eukaryotes * bacterivorous * omnivorous and predatory flagellates * heterotrophic and mixotrophic flagellates
    OECD category: Microbiology; Microbiology (BC-A)
    Impact factor: 6.064, year: 2021
    Method of publishing: Open access
    https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full
    Permanent Link: http://hdl.handle.net/11104/0320081
     
     
  9. 9.
    0539257 - BC 2021 RIV GB eng J - Journal Article
    Mukherjee, Indranil - Salcher, Michaela M. - Andrei, Adrian-Stefan - Kavagutti, Vinicius Silva - Shabarova, Tatiana - Grujcic, V. - Haber, Markus - Layoun, Paul - Hodoki, Y. - Nakano, S. - Šimek, Karel - Ghai, Rohit
    A freshwater radiation of diplonemids.
    Environmental Microbiology. Roč. 22, č. 11 (2020), s. 4658-4668. ISSN 1462-2912. E-ISSN 1462-2920
    R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GA19-23469S
    Grant - others:AV ČR(CZ) MSM200961801
    Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
    Institutional support: RVO:60077344
    Keywords : multiple sequence alignment * microbial eukaryotes * marine * community * diversity
    OECD category: Microbiology
    Impact factor: 5.491, year: 2020
    Method of publishing: Open access
    https://doi.org/10.1111/1462-2920.15209
    Permanent Link: http://hdl.handle.net/11104/0316927
    FileDownloadSizeCommentaryVersionAccess
    MUKHERJEE Environ Microbiol 2020.pdf01 MBAuthor´s preprintopen-access
     
     
  10. 10.
    0538633 - BC 2021 RIV GB eng J - Journal Article
    Šimek, Karel - Grujčič, Vesna - Mukherjee, Indranil - Kasalický, Vojtěch - Nedoma, Jiří - Posch, T. - Mehrshad, Maliheh - Salcher, Michaela M.
    Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes.
    FEMS Microbiology Ecology. Roč. 96, č. 10 (2020), č. článku fiaa121. ISSN 0168-6496. E-ISSN 1574-6941
    R&D Projects: GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
    Institutional support: RVO:60077344
    Keywords : ciliates * bacterivorous and predatory flagellates * Cercozoa * Cryptophyceae * freshwater microbial food webs * Katablepharidacea
    OECD category: Ecology
    Impact factor: 4.194, year: 2020
    Method of publishing: Open access
    https://doi.org/10.1093/femsec/fiaa121
    Permanent Link: http://hdl.handle.net/11104/0316400
    FileDownloadSizeCommentaryVersionAccess
    SIMEK FEMS Microbiol Ecol 2020.pdf03.9 MBAuthor´s preprintopen-access
     
     

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