Search results
- 1.0583805 - BC 2024 RIV GB eng J - Journal Article
Kavagutti, Vinicius Silva - Bulzu, Paul-Adrian - Chiriac, Maria-Cecilia - Salcher, Michaela M. - Mukherjee, Indranil - Shabarova, Tatiana - Grujčič, Vesna - Mehrshad, Maliheh - Kasalický, Vojtěch - Andrei, A.S. - Jezberová, Jitka - Seďa, Jaromír - Rychtecký, Pavel - Znachor, Petr - Šimek, Karel - Ghai, Rohit
High-resolution metagenomic reconstruction of the freshwater spring bloom.
Microbiome. Roč. 11, č. 1 (2023), č. článku 15. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA21-21990S; GA ČR(CZ) GA19-23469S; GA ČR GA22-03662S; GA ČR(CZ) GA19-23261S; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : bacterioplankton populations * seasonal succession * giant virus * chrysochromulina
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-022-01451-4
Permanent Link: https://hdl.handle.net/11104/0351803 - 2.0583794 - BC 2024 RIV GB eng J - Journal Article
Park, Hongjae - Shabarova, Tatiana - Salcher, Michaela M. - Kosová, Lenka - Rychtecký, Pavel - Mukherjee, Indranil - Šimek, Karel - Porcal, Petr - Seďa, Jaromír - Znachor, Petr - Kasalický, Vojtěch
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model.
Microbiome. Roč. 11, č. 1 (2023), č. článku 112. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GA19-00113S; GA MŠMT(CZ) EF16_025/0007417; GA ČR GA22-33245S; GA ČR GF22-35826K
Institutional support: RVO:60077344
Keywords : rna gene-sequences * niche separation * Freshwater reservoirs * Microbial communities * Spatiotemporal dynamics * Microdiversity * PEG model
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-023-01522-0
Permanent Link: https://hdl.handle.net/11104/0351793 - 3.0583665 - BC 2024 RIV GB eng J - Journal Article
Šimek, Karel - Mukherjee, Indranil - Szoke-Nagy, Tiberiu - Haber, Markus - Salcher, Michaela M. - Ghai, Rohit
Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores.
The ISME Journal. Roč. 17, č. 1 (2023), s. 84-94. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR(CZ) GA21-21990S; GA ČR(CZ) GX20-12496X; GA ČR GF22-35826K; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : protists * sequence * marine * cryptomonas * paramecium
OECD category: Marine biology, freshwater biology, limnology
Impact factor: 11, year: 2022
Method of publishing: Open access
https://doi.org/10.1038/s41396-022-01326-4
Permanent Link: https://hdl.handle.net/11104/0351690 - 4.0561632 - BC 2023 RIV GB eng J - Journal Article
Šimek, Karel - Mukherjee, Indranil - Nedoma, Jiří - Paula, Caio César Pires de - Jezberová, Jitka - Sirová, Dagmara - Vrba, Jaroslav
CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes.
Environmental Microbiology. Roč. 24, č. 9 (2022), s. 4256-4273. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-16554S; GA ČR(CZ) GA19-23261S
Institutional support: RVO:60077344
Keywords : Protista * Bacteria * Flagellate
OECD category: Microbiology
Impact factor: 5.1, year: 2022
Method of publishing: Limited access
https://doi.org/10.1111/1462-2920.15846
Permanent Link: https://hdl.handle.net/11104/0340269 - 5.0557051 - BC 2023 RIV GB eng J - Journal Article
Prokopchuk, Galina - Korytář, Tomáš - Juricová, Valéria - Majstorović, Jovana - Horák, Aleš - Šimek, Karel - Lukeš, Julius
Trophic flexibility of marine diplonemids-switching from osmotrophy to bacterivory.
The ISME Journal. Roč. 16, č. 5 (2022), s. 1409-1419. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR(CZ) GA18-23787S; GA MŠMT(CZ) LL1601; GA MŠMT(CZ) EF16_019/0000759; GA MŠMT(CZ) EF16_025/0007417
Grant - others:Gordon and Betty Moore Foundation(US) #9354
Program: Science
Institutional support: RVO:60077344
Keywords : microbial food-web * fresh-water * ambulator larsen * protists * flagellate * phylogeny * diversity * predation * patterson * reservoir
OECD category: Marine biology, freshwater biology, limnology
Impact factor: 11, year: 2022
Method of publishing: Limited access
https://www.nature.com/articles/s41396-022-01192-0
Permanent Link: https://hdl.handle.net/11104/0340212 - 6.0552459 - BC 2022 RIV GB eng J - Journal Article
Sagová-Marečková, M. - Boenigk, J. - Bouchez, A. - Cermakova, K. - Chonova, T. - Cordier, T. - Eisendle, U. - Elersek, T. - Fazi, S. - Fleituch, T. - Frühe, L. - Gajdosova, M. - Graupner, N. - Haegerbaeumer, A. - Kelly, A.-M. - Kopecký, J. - Leese, F. - Nõges, P. - Orlic, S. - Panksep, K. - Pawlowski, J. - Petrusek, A. - Piggott, J.J. - Rusch, J.C. - Salis, R. - Schenk, J. - Šimek, Karel - Šťovíček, A. - Strand, D.A. - Vasquez, M.I. - Vralstad, T. - Zlatkovic, S. - Zupancic, M. - Stoeck, T.
Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring.
Water Research. Roč. 191, 1 March 2021 (2021), č. článku 116767. ISSN 0043-1354. E-ISSN 1879-2448
Institutional support: RVO:60077344
Keywords : sulfate-reducing bacteria * microbial community composition * antibiotic-resistance genes * waste-water * nitrogen-fixation * quantitative pcr * biotic integrity * next-generation * phytoplankton composition * cyanobacterial community
OECD category: Microbiology
Impact factor: 13.400, year: 2021
Method of publishing: Open access
https://doi.org/10.1016/j.watres.2020.116767
Permanent Link: http://hdl.handle.net/11104/0327583 - 7.0552451 - BC 2022 RIV GB eng J - Journal Article
Shabarova, Tatiana - Salcher, Michaela M. - Porcal, Petr - Znachor, Petr - Nedoma, Jiří - Grossart, H.P. - Seďa, Jaromír - Hejzlar, Josef - Šimek, Karel
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession.
Nature Microbiology. Roč. 6, č. 4 (2021), s. 479-+. ISSN 2058-5276. E-ISSN 2058-5276
R&D Projects: GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * ribosomal-rna * peg-model * lake * assemblages * phosphorus * projections * reservoirs * emissions * silva
OECD category: Microbiology
Impact factor: 30.964, year: 2021
Method of publishing: Limited access
https://doi.org/10.1038/s41564-020-00852-1
Permanent Link: http://hdl.handle.net/11104/0327580File Download Size Commentary Version Access SHABAROVA NatureMicrobiol 2021.pdf 0 13.8 MB Author´s preprint require - 8.0542712 - MBÚ 2022 RIV CH eng J - Journal Article
Piwosz, Kasia - Mukherjee, Indranil - Salcher, Michaela M. - Grujcic, V. - Šimek, Karel
CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology.
Frontiers in Microbiology. Roč. 12, MAR 4 2021 (2021), č. článku 640066. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : aquatic microbial food webs * card-fish * grazing by protists * protists * unicellular eukaryotes * bacterivorous * omnivorous and predatory flagellates * heterotrophic and mixotrophic flagellates
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 6.064, year: 2021
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full
Permanent Link: http://hdl.handle.net/11104/0320081 - 9.0539257 - BC 2021 RIV GB eng J - Journal Article
Mukherjee, Indranil - Salcher, Michaela M. - Andrei, Adrian-Stefan - Kavagutti, Vinicius Silva - Shabarova, Tatiana - Grujcic, V. - Haber, Markus - Layoun, Paul - Hodoki, Y. - Nakano, S. - Šimek, Karel - Ghai, Rohit
A freshwater radiation of diplonemids.
Environmental Microbiology. Roč. 22, č. 11 (2020), s. 4658-4668. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GA19-23469S
Grant - others:AV ČR(CZ) MSM200961801
Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:60077344
Keywords : multiple sequence alignment * microbial eukaryotes * marine * community * diversity
OECD category: Microbiology
Impact factor: 5.491, year: 2020
Method of publishing: Open access
https://doi.org/10.1111/1462-2920.15209
Permanent Link: http://hdl.handle.net/11104/0316927File Download Size Commentary Version Access MUKHERJEE Environ Microbiol 2020.pdf 0 1 MB Author´s preprint open-access - 10.0538633 - BC 2021 RIV GB eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Mukherjee, Indranil - Kasalický, Vojtěch - Nedoma, Jiří - Posch, T. - Mehrshad, Maliheh - Salcher, Michaela M.
Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes.
FEMS Microbiology Ecology. Roč. 96, č. 10 (2020), č. článku fiaa121. ISSN 0168-6496. E-ISSN 1574-6941
R&D Projects: GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : ciliates * bacterivorous and predatory flagellates * Cercozoa * Cryptophyceae * freshwater microbial food webs * Katablepharidacea
OECD category: Ecology
Impact factor: 4.194, year: 2020
Method of publishing: Open access
https://doi.org/10.1093/femsec/fiaa121
Permanent Link: http://hdl.handle.net/11104/0316400File Download Size Commentary Version Access SIMEK FEMS Microbiol Ecol 2020.pdf 0 3.9 MB Author´s preprint open-access