Search results
- 1.0584248 - BC 2024 RIV US eng J - Journal Article
Neumann, Pavel - Oliveira, Ludmila - Jang, Tae-Soo - Novák, Petr - Koblížková, Andrea - Schubert, V. - Houben, A. - Macas, Jiří
Disruption of the standard kinetochore in holocentric Cuscuta species.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 120, č. 21 (2023), č. článku e2300877120. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA20-25440S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : kinetochore * centromere * holocentric * monocentric * Cuscuta
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 11.1, year: 2022
Method of publishing: Open access
https://www.pnas.org/doi/10.1073/pnas.2300877120
Permanent Link: https://hdl.handle.net/11104/0352329 - 2.0584246 - BC 2024 RIV US eng J - Journal Article
Macas, Jiří - Robledillo, Laura Avila - Kreplak, J. - Novák, Petr - Koblížková, Andrea - Vrbová, Iva - Burstin, J. - Neumann, Pavel
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes.
PLoS Genetics. Roč. 19, č. 2 (2023), č. článku e1010633. ISSN 1553-7404. E-ISSN 1553-7404
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : genome * kinetochore * duplication * annotation * generation * alignment * sequence * provides * shows * gene
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.5, year: 2022
Method of publishing: Open access
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010633
Permanent Link: https://hdl.handle.net/11104/0352322 - 3.0584244 - BC 2024 RIV US eng J - Journal Article
Kuo, Y. T. - Câmara, A. S. - Schubert, V. - Neumann, Pavel - Macas, Jiří - Melzer, M. - Chen, J. - Fuchs, J. - Abel, S. - Klocke, E. - Huettel, B. - Himmelbach, A. - Demidov, D. - Dunemann, F. - Mascher, M. - Ishii, T. - Marques, A. - Houben, A.
Holocentromeres can consist of merely a few megabase-sized satellite arrays.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 3502. E-ISSN 2041-1723
R&D Projects: GA ČR(CZ) GA20-25440S
Institutional support: RVO:60077344
Keywords : nuclear-dna content * histone h3 * chionographis liliaceae * luzula-elegans * centromere * chromosomes * arabidopsis * methylation * euchromatin * generation
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-38922-7
Permanent Link: https://hdl.handle.net/11104/0352321 - 4.0571900 - ÚEB 2024 RIV DE eng J - Journal Article
Jayakodi, M. - Golicz, A. A. - Kreplak, J. - Fechete, L. I. - Angra, D. - Bednář, P. - Bornhofen, E. - Zhang, H. - Boussageon, R. - Kaur, S. - Cheung, K. - Čížková, Jana - Gundlach, H. - Hallab, A. - Imbert, E. - Keeble-Gagnère, G. - Koblížková, Andrea - Kobrlová, L. - Krejčí, P. - Mouritzen, T. W. - Neumann, Pavel - Nadzieja, M. - Nielsen, L. K. - Novák, Petr - Orabi, J. - Padmarasu, S. - Robertson-Shersby-Harvie, T. - Robledillo, Laura Avila - Schiemann, A. - Tanskanen, J. - Törönen, P. - Warsame, A. O. - Wittenberg, A. H.J. - Himmelbach, A. - Aubert, G. - Courty, P.-E. - Doležel, Jaroslav - Holm, L. U. - Janss, L. L. - Khazaei, H. - Macas, Jiří - Mascher, M. - Smýkal, P. - Snowdon, R. J. - Stein, N. - Stoddard, F. L. - Stougaard, J. - Tayeh, N. - Torres, A. M. - Usadel, C. - Schubert, I. - O’Sullivan, D. - Schulman, A. H. - Andersen, S.U.
The giant diploid faba genome unlocks variation in a global protein crop.
Nature. Roč. 615, č. 7953 (2023), s. 652-659. ISSN 0028-0836. E-ISSN 1476-4687
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61389030 ; RVO:60077344
Keywords : NUCLEAR-DNA CONTENT * SEQUENCE * PROGRAM
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 64.8, year: 2022
Method of publishing: Open access
https://doi.org/10.1038/s41586-023-05791-5
Permanent Link: https://hdl.handle.net/11104/0342790File Download Size Commentary Version Access 2023_Jayakodi_NATURE_652.pdf 2 11.5 MB Other open-access - 5.0568618 - BC 2023 RIV US eng J - Journal Article
Hofstatter, P. G. - Thangavel, G. - Lux, T. - Neumann, Pavel - Vondrak, Tihana - Novák, Petr - Zhang, M. - Costa, L. - Castellani, M. - Scott, A. - Toegelová, Helena - Fuchs, J. - Mata-Sucre, Y. - Dias, Y. - Vanzela, A.L.L. - Huettel, B. - Almeida, C. C. S. - Šimková, Hana - Souza, G. - Pedrosa-Harand, A. - Macas, Jiří - Mayer, K. F. X. - Houben, A. - Marques, A.
Repeat-based holocentromeres influence genome architecture and karyotype evolution.
Cell. Roč. 185, č. 17 (2022), s. 3153-3168. ISSN 0092-8674. E-ISSN 1097-4172
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:61389030
Keywords : spatial genome organization * holocentric chromosomes * genome regulation * centromere * Rhynchospora * transposable elements * whole-genome duplication
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
Impact factor: 64.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0092867422007978?via%3Dihub#kwrds0010
Permanent Link: https://hdl.handle.net/11104/0339891 - 6.0548344 - BC 2022 RIV SE eng J - Journal Article
Vondrak, Tihana - Oliveira, Ludmila - Novák, Petr - Koblížková, Andrea - Neumann, Pavel - Macas, Jiří
Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads.
Computational and Structural Biotechnology Journal. Roč. 19, Apr 22 (2021), s. 2179-2189. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Research Infrastructure: ELIXIR-CZ II - 90131
Institutional support: RVO:60077344
Keywords : Satellite DNA * Heterochromatin * Oxford Nanopore sequencing * Fluorescence in situ hybridization * Holocentric chromosomes * LINE elements
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 6.155, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037021001227?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0329092 - 7.0535085 - BC 2022 RIV GB eng J - Journal Article
Neumann, Pavel - Oliveira, Ludmila - Čížková, Jana - Jang, Tae-Soo - Klemme, Sonja - Novák, Petr - Stelmach, K. - Koblížková, Andrea - Doležel, Jaroslav - Macas, Jiří
Impact of parasitic lifestyle and different types of centromere organization on chromosome and genome evolution in the plant genus Cuscuta.
New Phytologist. Roč. 229, č. 4 (2021), s. 2365-2377. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA ČR(CZ) GA17-09750S; GA MŠMT(CZ) EF16_019/0000827
Institutional support: RVO:60077344 ; RVO:61389030
Keywords : centromere * Convolvulaceae * Cuscuta * genome size * holocentric chromosomes * monocentric chromosomes * repetitive DNA
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
Impact factor: 10.323, year: 2021
Method of publishing: Open access
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17003
Permanent Link: http://hdl.handle.net/11104/0320779 - 8.0534690 - BC 2021 RIV GB eng J - Journal Article
Novák, Petr - Neumann, Pavel - Macas, Jiří
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2.
Nature Protocols. Roč. 15, č. 11 (2020), s. 3745-3776. ISSN 1754-2189. E-ISSN 1750-2799
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:60077344
Keywords : generation * evolution * elements
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 13.491, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41596-020-0400-y
Permanent Link: http://hdl.handle.net/11104/0312865 - 9.0533992 - BC 2021 RIV GB eng J - Journal Article
Novák, Petr - Guignard, M.S. - Neumann, Pavel - Kelly, L.J. - Mlinarec, J. - Koblížková, Andrea - Dodsworth, S. - Kovařík, Aleš - Pellicer, J. - Wang, W. - Macas, Jiří - Leitch, I. J. - Leitch, A.R.
Repeat-sequence turnover shifts fundamentally in species with large genomes.
Nature Plants. Roč. 6, č. 11 (2020), s. 1325-1329. ISSN 2055-026X. E-ISSN 2055-0278
R&D Projects: GA MŠMT(CZ) EF16_013/0001777; GA MŠMT(CZ) LM2015047
Institutional support: RVO:60077344 ; RVO:68081707
Keywords : beta regression * stomatal size * evolution * rates * photosynthesis
OECD category: Genetics and heredity (medical genetics to be 3); Plant sciences, botany (BFU-R)
Impact factor: 15.793, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41477-020-00785-x
Permanent Link: http://hdl.handle.net/11104/0312866 - 10.0532455 - BC 2021 RIV US eng J - Journal Article
Robledillo, Laura Avila - Neumann, Pavel - Koblížková, Andrea - Novák, Petr - Vrbová, Iva - Macas, Jiří
Extraordinary Sequence Diversity and Promiscuity of Centromeric Satellites in the Legume Tribe Fabeae.
Molecular Biology and Evolution. Roč. 37, č. 8 (2020), s. 2341-2356. ISSN 0737-4038. E-ISSN 1537-1719
R&D Projects: GA ČR(CZ) GA17-09750S; GA MŠMT(CZ) LM2015047
Institutional support: RVO:60077344
Keywords : centromere evolution * satellite DNA * CENH3 * ChIP-seq * plant chromosomes
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.240, year: 2020
Method of publishing: Open access
https://academic.oup.com/mbe/article/37/8/2341/5817320
Permanent Link: http://hdl.handle.net/11104/0310942