Search results
- 1.0584248 - BC 2024 RIV US eng J - Journal Article
Neumann, Pavel - Oliveira, Ludmila - Jang, Tae-Soo - Novák, Petr - Koblížková, Andrea - Schubert, V. - Houben, A. - Macas, Jiří
Disruption of the standard kinetochore in holocentric Cuscuta species.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 120, č. 21 (2023), č. článku e2300877120. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA20-25440S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : kinetochore * centromere * holocentric * monocentric * Cuscuta
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 11.1, year: 2022
Method of publishing: Open access
https://www.pnas.org/doi/10.1073/pnas.2300877120
Permanent Link: https://hdl.handle.net/11104/0352329 - 2.0584246 - BC 2024 RIV US eng J - Journal Article
Macas, Jiří - Robledillo, Laura Avila - Kreplak, J. - Novák, Petr - Koblížková, Andrea - Vrbová, Iva - Burstin, J. - Neumann, Pavel
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes.
PLoS Genetics. Roč. 19, č. 2 (2023), č. článku e1010633. ISSN 1553-7404. E-ISSN 1553-7404
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : genome * kinetochore * duplication * annotation * generation * alignment * sequence * provides * shows * gene
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.5, year: 2022
Method of publishing: Open access
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010633
Permanent Link: https://hdl.handle.net/11104/0352322 - 3.0584244 - BC 2024 RIV US eng J - Journal Article
Kuo, Y. T. - Câmara, A. S. - Schubert, V. - Neumann, Pavel - Macas, Jiří - Melzer, M. - Chen, J. - Fuchs, J. - Abel, S. - Klocke, E. - Huettel, B. - Himmelbach, A. - Demidov, D. - Dunemann, F. - Mascher, M. - Ishii, T. - Marques, A. - Houben, A.
Holocentromeres can consist of merely a few megabase-sized satellite arrays.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 3502. E-ISSN 2041-1723
R&D Projects: GA ČR(CZ) GA20-25440S
Institutional support: RVO:60077344
Keywords : nuclear-dna content * histone h3 * chionographis liliaceae * luzula-elegans * centromere * chromosomes * arabidopsis * methylation * euchromatin * generation
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-38922-7
Permanent Link: https://hdl.handle.net/11104/0352321 - 4.0584200 - BC 2024 RIV US eng J - Journal Article
Edwards, A. - Njaci, I. - Sarkar, A. - Jiang, Z. - Kaithakottil, G. G. - Moore, C. - Cheema, J. - Stevenson, C. E. M. - Rejzek, M. - Novák, Petr - Vigouroux, M. - Vickers, M. - Wouters, R. H. M. - Paajanen, P. - Steuernagel, B. - Moore, J. D. - Higgins, J. - Swarbreck, D. - Martens, S. - Kim, C. Y. - Weng, J. - Mundree, S. - Kilian, B. - Kumar, S. - Loose, M. - Yant, L. - Macas, Jiří - Wang, T. L. - Martin, C. - Emmrich, P. M. F.
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 5199. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : Grass pea (Lathyrus sativus L.) * L. sativus genome * biosynthetic pathway * neurotoxin
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-36503-2
Permanent Link: https://hdl.handle.net/11104/0352311 - 5.0571900 - ÚEB 2024 RIV DE eng J - Journal Article
Jayakodi, M. - Golicz, A. A. - Kreplak, J. - Fechete, L. I. - Angra, D. - Bednář, P. - Bornhofen, E. - Zhang, H. - Boussageon, R. - Kaur, S. - Cheung, K. - Čížková, Jana - Gundlach, H. - Hallab, A. - Imbert, E. - Keeble-Gagnère, G. - Koblížková, Andrea - Kobrlová, L. - Krejčí, P. - Mouritzen, T. W. - Neumann, Pavel - Nadzieja, M. - Nielsen, L. K. - Novák, Petr - Orabi, J. - Padmarasu, S. - Robertson-Shersby-Harvie, T. - Robledillo, Laura Avila - Schiemann, A. - Tanskanen, J. - Törönen, P. - Warsame, A. O. - Wittenberg, A. H.J. - Himmelbach, A. - Aubert, G. - Courty, P.-E. - Doležel, Jaroslav - Holm, L. U. - Janss, L. L. - Khazaei, H. - Macas, Jiří - Mascher, M. - Smýkal, P. - Snowdon, R. J. - Stein, N. - Stoddard, F. L. - Stougaard, J. - Tayeh, N. - Torres, A. M. - Usadel, C. - Schubert, I. - O’Sullivan, D. - Schulman, A. H. - Andersen, S.U.
The giant diploid faba genome unlocks variation in a global protein crop.
Nature. Roč. 615, č. 7953 (2023), s. 652-659. ISSN 0028-0836. E-ISSN 1476-4687
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61389030 ; RVO:60077344
Keywords : NUCLEAR-DNA CONTENT * SEQUENCE * PROGRAM
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 64.8, year: 2022
Method of publishing: Open access
https://doi.org/10.1038/s41586-023-05791-5
Permanent Link: https://hdl.handle.net/11104/0342790File Download Size Commentary Version Access 2023_Jayakodi_NATURE_652.pdf 2 11.5 MB Other open-access - 6.0568619 - BC 2023 RIV GB eng J - Journal Article
Schley, R. J. - Pellicer, J. - Ge, X. - Barrett, C. - Bellot, S. - Guignard, M. S. - Novák, Petr - Suda, Jan - Fraser, D. - Baker, W. J. - Dodsworth, S. - Macas, Jiří - Leitch, A. R. - Leitch, I. J.
The ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity.
New Phytologist. Roč. 236, č. 2 (2022), s. 433-446. ISSN 0028-646X. E-ISSN 1469-8137
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:67985939
Keywords : adaptation * Arecaceae (palms) * ecology * genome size * phylogenetic regression * plant evolution * trait evolution * transposable elements
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (BU-J)
Impact factor: 9.4, year: 2022
Method of publishing: Open access
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.18323
Permanent Link: https://hdl.handle.net/11104/0339892 - 7.0568618 - BC 2023 RIV US eng J - Journal Article
Hofstatter, P. G. - Thangavel, G. - Lux, T. - Neumann, Pavel - Vondrak, Tihana - Novák, Petr - Zhang, M. - Costa, L. - Castellani, M. - Scott, A. - Toegelová, Helena - Fuchs, J. - Mata-Sucre, Y. - Dias, Y. - Vanzela, A.L.L. - Huettel, B. - Almeida, C. C. S. - Šimková, Hana - Souza, G. - Pedrosa-Harand, A. - Macas, Jiří - Mayer, K. F. X. - Houben, A. - Marques, A.
Repeat-based holocentromeres influence genome architecture and karyotype evolution.
Cell. Roč. 185, č. 17 (2022), s. 3153-3168. ISSN 0092-8674. E-ISSN 1097-4172
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344 ; RVO:61389030
Keywords : spatial genome organization * holocentric chromosomes * genome regulation * centromere * Rhynchospora * transposable elements * whole-genome duplication
OECD category: Genetics and heredity (medical genetics to be 3); Genetics and heredity (medical genetics to be 3) (UEB-Q)
Impact factor: 64.5, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0092867422007978?via%3Dihub#kwrds0010
Permanent Link: https://hdl.handle.net/11104/0339891 - 8.0558708 - ÚEB 2023 RIV US eng J - Journal Article
Tulpová, Zuzana - Kovařík, Aleš - Toegelová, Helena - Navrátilová, Pavla - Kapustová, Veronika - Hřibová, Eva - Vrána, Jan - Macas, Jiří - Doležel, Jaroslav - Šimková, Hana
Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach.
Plant Genome. Roč. 15, č. 1 (2022), č. článku e20191. E-ISSN 1940-3372
R&D Projects: GA ČR(CZ) GA17-17564S; GA ČR(CZ) GA19-03442S; GA MŠMT(CZ) EF16_019/0000827; GA MŠMT(CZ) LM2018131
Institutional support: RVO:61389030 ; RVO:68081707 ; RVO:60077344
Keywords : RNA GENES * CYTOSINE METHYLATION * GENOME
OECD category: Biochemistry and molecular biology; Genetics and heredity (medical genetics to be 3) (BC-A)
Impact factor: 4.2, year: 2022
Method of publishing: Open access
http://doi.org/10.1002/tpg2.20191
Permanent Link: http://hdl.handle.net/11104/0332273File Download Size Commentary Version Access 2022_Tulpova_PLANT GENOME_e20191.pdf 1 1.9 MB Other open-access - 9.0548344 - BC 2022 RIV SE eng J - Journal Article
Vondrak, Tihana - Oliveira, Ludmila - Novák, Petr - Koblížková, Andrea - Neumann, Pavel - Macas, Jiří
Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads.
Computational and Structural Biotechnology Journal. Roč. 19, Apr 22 (2021), s. 2179-2189. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GA20-24252S; GA MŠMT(CZ) LM2018131
Research Infrastructure: ELIXIR-CZ II - 90131
Institutional support: RVO:60077344
Keywords : Satellite DNA * Heterochromatin * Oxford Nanopore sequencing * Fluorescence in situ hybridization * Holocentric chromosomes * LINE elements
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 6.155, year: 2021
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037021001227?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0329092 - 10.0548227 - BC 2022 RIV DE eng J - Journal Article
Hoang, P.T. N. - Rouillard, J.-M. - Macas, Jiří - Kubalova, I. - Schubert, V. - Schubert, I.
Limitation of current probe design for oligo-cross-FISH, exemplified by chromosome evolution studies in duckweeds.
Chromosoma. Roč. 130, č. 1 (2021), s. 15-25. ISSN 0009-5915. E-ISSN 1432-0886
Institutional support: RVO:60077344
Keywords : Duckweeds * Spirodela * Landoltia * Lemna * Karyotype evolution * Dual-color oligo-FISH * Microsatellites * Structured illumination microscopy * Wolffia * Wolffiella
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 2.919, year: 2021
Method of publishing: Open access
https://link.springer.com/article/10.1007/s00412-020-00749-2
Permanent Link: http://hdl.handle.net/11104/0329076