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- 1.0585960 - ÚOCHB 2025 RIV AT eng C - Conference Paper (international conference)
Bushuiev, A. - Bushuiev, Roman - Sedlář, J. - Pluskal, Tomáš - Damborský, J. - Mazurenko, S. - Šivic, J.
Revealing data leakage in protein interaction benchmarks.
GEM-2024. ICLR 2024 Workshop on Generative and Experimental Perspectives for Biomolecular Design. Vienna: ICLR, 2024.
[ICLR 2024. International Conference on Learning Representations /12./. Vienna (AT), 07.05.2024-11.05.2024]
R&D Projects: GA MŠMT(CZ) LM2023055; GA ČR(CZ) GM21-11563M
EU Projects: European Commission(XE) 891397 - KavaTarget
Research Infrastructure: e-INFRA CZ II - 90254; RECETOX RI II - 90269
Institutional support: RVO:61388963
Keywords : protein-protein interactions * data leakage * benchmarks * data splits
OECD category: Other biological topics
https://openreview.net/forum?id=ORMXYUK5IY
Permanent Link: https://hdl.handle.net/11104/0353594File Download Size Commentary Version Access 0585960.pdf 0 1.7 MB Publisher’s postprint open-access - 2.0585897 - ÚOCHB 2025 RIV AT eng C - Conference Paper (international conference)
Bushuiev, A. - Bushuiev, Roman - Kouba, P. - Filkin, A. - Gabrielová, M. - Gabriel, M. - Sedlář, J. - Pluskal, Tomáš - Damborský, J. - Mazurenko, S. - Šivic, J.
Learning to design protein-protein interactions with enhanced generalization.
ICLR 2024. The Twelfth International Conference on Learning Representations. Vienna: ICLR, 2024.
[ICLR 2024. International Conference on Learning Representations /12./. Vienna (AT), 07.05.2024-11.05.2024]
R&D Projects: GA MŠMT(CZ) LM2023055; GA ČR(CZ) GM21-11563M
EU Projects: European Commission(XE) 891397 - KavaTarget
Research Infrastructure: e-INFRA CZ II - 90254; RECETOX RI II - 90269
Institutional support: RVO:61388963
Keywords : protein-protein interactions * protein design * generalization * self-supervised learning * equivariant 3D representations
OECD category: Other biological topics
https://openreview.net/forum?id=xcMmebCT7s
Permanent Link: https://hdl.handle.net/11104/0353542File Download Size Commentary Version Access 0585897.pdf 0 9.5 MB Publisher’s postprint open-access