Search results
- 1.0583248 - BTÚ 2024 RIV US eng J - Journal Article
Husťáková, Blanka - Trundová, Mária - Adámková, Kristýna - Koval, Tomáš - Dušková, Jarmila - Dohnálek, Jan
A highly active S1-P1 nuclease from the opportunistic pathogen iStenotrophomonas maltophilia/i cleaves c-di-GMP.
FEBS Letters. Roč. 597, č. 16 (2023), s. 2103-2118. ISSN 0014-5793. E-ISSN 1873-3468
R&D Projects: GA ČR(CZ) GA20-12109S; GA MŠMT EF15_003/0000447
Research Infrastructure: CIISB III - 90242
Institutional support: RVO:86652036
Keywords : n-glycosylation * phosphodiesterase * mechanism * enzyme * S1-P1 nuclease
OECD category: Biophysics
Impact factor: 3.5, year: 2022
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/10.1002/1873-3468.14683
Permanent Link: https://hdl.handle.net/11104/0351252 - 2.0575356 - MBÚ 2024 RIV US eng J - Journal Article
Sudzinová, Petra - Šanderová, Hana - Koval, Tomáš - Skálová, Tereza - Borah, Nabajyoti - Hnilicová, Jarmila - Kouba, Tomáš - Dohnálek, Jan - Krásný, Libor
What the Hel: recent advances in understanding rifampicin resistance in bacteria.
FEMS Microbiology Reviews. Roč. 47, č. 6 (2023), č. článku fuac051. ISSN 0168-6445. E-ISSN 1574-6976
R&D Projects: GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) LX22NPO5103; GA MŠMT EF15_003/0000447
Institutional support: RVO:61388971 ; RVO:86652036 ; RVO:61388963
Keywords : rifampicin * antibiotics * resistance * bacteria * RNA polymerase * HelD * HelR
OECD category: Microbiology; Microbiology (BTO-N); Biochemistry and molecular biology (UOCHB-X)
Impact factor: 11.3, year: 2022
Method of publishing: Open access
https://academic.oup.com/femsre/advance-article/doi/10.1093/femsre/fuac051/6957393?login=true
Permanent Link: https://hdl.handle.net/11104/0345143File Download Size Commentary Version Access 2023_Sudzinova_FEMS Microbiol Rev_HelD.pdf 1 3.7 MB Author´s preprint require - 3.0562970 - BTÚ 2023 RIV DK eng J - Journal Article
Adámková, Kristýna - Koval, Tomáš - Ostergaard, L. H. - Dušková, Jarmila - Malý, Martin - Švecová, Leona - Skálová, Tereza - Kolenko, Petr - Dohnálek, Jan
Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects.
Acta Crystallographica Section D-Biological Crystallography. Roč. 78, OCT 1 2022 (2022), s. 1194-1209. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2018127; GA ČR(CZ) GA20-12109S; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036
Keywords : S1 nuclease * Aspergillus oryzae * lattice-translocation defects * nucleotides * nucleosides * complexes
OECD category: Analytical chemistry
Impact factor: 2.2, year: 2022
Method of publishing: Limited access
https://scripts.iucr.org/cgi-bin/paper?S2059798322008397
Permanent Link: https://hdl.handle.net/11104/0340705 - 4.0558580 - MBÚ 2023 RIV CH eng J - Journal Article
Vaňková Hausnerová, Viola - Marvalová, Olga - Šiková, Michaela - Shoman, Mahmoud - Havelková, Jarmila - Kambová, Milada - Janoušková, Martina - Kumar, Dilip - Halada, Petr - Schwarz, Marek - Krásný, Libor - Hnilicová, Jarmila - Pánek, Josef
Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search.
Frontiers in Microbiology. Roč. 13, MAY 11 2022 (2022), č. článku 848536. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GA20-07473S; GA ČR(CZ) GA20-12109S; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:61388971
Keywords : 6s rna * escherichia-coli * sp-nov. * short transcripts * noncoding rnas * glycomyces * release * growth * sequence * requires * sRNA * Actinobacteria * Ms1 RNA * Streptomyces * gene synteny * Mycobacterium * 6s rna
OECD category: Microbiology
Impact factor: 5.2, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2022.848536/full
Permanent Link: http://hdl.handle.net/11104/0332218 - 5.0550734 - BTÚ 2022 RIV CH eng J - Journal Article
Dohnálek, Jan - Dušková, Jarmila - Tishchenko, Galina - Kolenko, Petr - Skálová, Tereza - Novák, Petr - Fejfarová, Karla - Šimůnek, Jiří
Chitinase Chit62J4 essential for chitin processing by human microbiome bacterium clostridium paraputrificum J4.
Molecules. Roč. 26, č. 19 (2021), č. článku 5978. E-ISSN 1420-3049
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR(CZ) GA20-12109S
Research Infrastructure: CIISB - 90043; CIISB II - 90127
Institutional support: RVO:86652036 ; RVO:61389013 ; RVO:61388971 ; RVO:67985904
Keywords : Adaptation to the environment * Chitinase * Exochitinase * Glycosyl hydrolase family 18 * Human commensal bacterium
OECD category: Biochemistry and molecular biology; Polymer science (UMCH-V)
Impact factor: 4.927, year: 2021
Method of publishing: Open access
https://www.mdpi.com/1420-3049/26/19/5978
Permanent Link: http://hdl.handle.net/11104/0326061 - 6.0545113 - MBÚ 2022 RIV GB eng J - Journal Article
Benda, M. - Woelfel, S. - Fasshauer, P. - Gunka, K. - Klumpp, S. - Poehlein, A. - Kálalová, Debora - Šanderová, Hana - Daniel, R. - Krásný, Libor - Stuelke, J.
Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis.
Nucleic Acids Research. Roč. 49, č. 12 (2021), s. 7088-7102. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA ČR(CZ) GA20-12109S
Institutional support: RVO:61388971
Keywords : escherichia-coli * gene-expression * global analysis * transcription factor * degrading machine * delta-subunit * rapid changes * half-lives * polymerase * protein
OECD category: Microbiology
Impact factor: 19.160, year: 2021
Method of publishing: Open access
https://academic.oup.com/nar/article/49/12/7088/6307901
Permanent Link: http://hdl.handle.net/11104/0321873 - 7.0541594 - MBÚ 2022 RIV CH eng J - Journal Article
Vohradský, Jiří - Schwarz, Marek - Ramaniuk, Olga - Ruiz-Larrabeiti, Olatz - Vaňková Hausnerová, Viola - Šanderová, Hana - Krásný, Libor
Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth.
Microorganisms. Roč. 9, č. 1 (2021). E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_013/0001777; GA ČR(CZ) GA20-12109S
Institutional support: RVO:61388971
Keywords : Bacillus subtilis * SigB * gene regulatory networks * computational modeling * promoter sequence analysis
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 4.926, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2076-2607/9/1/112
Permanent Link: http://hdl.handle.net/11104/0319132 - 8.0541492 - MBÚ 2022 RIV CH eng J - Journal Article
Sudzinová, Petra - Kambová, Milada - Ramaniuk, Olga - Benda, Martin - Šanderová, Hana - Krásný, Libor
Effects of DNA Topology on Transcription from rRNA Promoters in Bacillus subtilis.
Microorganisms. Roč. 9, č. 1 (2021), č. článku 87. E-ISSN 2076-2607
R&D Projects: GA ČR(CZ) GA20-12109S
Research Infrastructure: C4SYS - 90055
Institutional support: RVO:61388971
Keywords : Bacillus subtilis * transcription * ribosomal RNA * DNA topology
OECD category: Microbiology
Impact factor: 4.926, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2076-2607/9/1/87
Permanent Link: http://hdl.handle.net/11104/0319059 - 9.0538228 - BTÚ 2021 RIV GB eng J - Journal Article
Kouba, T. - Koval, Tomáš - Sudzinová, Petra - Pospíšil, Jiří - Brezovská, Barbora - Hnilicová, Jarmila - Šanderová, Hana - Janoušková, Martina - Šiková, Michaela - Halada, Petr - Sýkora, Michal - Barvík, I. - Nováček, J. - Trundová, Mária - Dušková, Jarmila - Skálová, Tereza - Chon, U. R. - Murakami, K. S. - Dohnálek, Jan - Krásný, Libor
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.
Nature Communications. Roč. 11, č. 1 (2020), č. článku 6419. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2015043; GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001776
Grant - others:OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447
Institutional support: RVO:86652036 ; RVO:61388971 ; RVO:68378050
Keywords : DNA-directed RNA Polymerase * Bacterial RNA * Sigma Factors
OECD category: Biophysics; Microbiology (MBU-M); Biochemistry and molecular biology (UMG-J)
Impact factor: 14.919, year: 2020
Method of publishing: Open access
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749160/
Permanent Link: http://hdl.handle.net/11104/0316062 - 10.0535556 - ÚOCHB 2021 RIV US eng J - Journal Article
Chakrapani, Aswathi - Vaňková Hausnerová, Viola - Ruiz-Larrabeiti, Olatz - Pohl, Radek - Krásný, Libor - Hocek, Michal
Photocaged 5-(Hydroxymethyl)pyrimidine Nucleoside Phosphoramidites for Specific Photoactivatable Epigenetic Labeling of DNA.
Organic Letters. Roč. 22, č. 22 (2020), s. 9081-9085. ISSN 1523-7060. E-ISSN 1523-7052
R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GX20-00885X; GA ČR(CZ) GA20-12109S
Grant - others:AV ČR(CZ) Akademická prémie - Praemium Academiae
Institutional support: RVO:61388963 ; RVO:61388971
Keywords : nucleosides * epigenetic nucleobases * oligonucleotides
OECD category: Organic chemistry; Microbiology (MBU-M)
Impact factor: 6.005, year: 2020
Method of publishing: Open access
https://doi.org/10.1021/acs.orglett.0c03462
Permanent Link: http://hdl.handle.net/11104/0313624