Search results
- 1.0585153 - ÚOCHB 2025 RIV NL eng J - Journal Article
Feidakis, C. P. - Křivák, Radoslav - Hoksza, D. - Novotný, M.
AHoJ-DB: A PDB-wide Assignment of apo & holo Relationships Based on Individual Protein-Ligand Interactions.
Journal of Molecular Biology. (2024), č. článku 168545. ISSN 0022-2836. E-ISSN 1089-8638
R&D Projects: GA MŠMT(CZ) LM2018131
Research Infrastructure: e-INFRA CZ II - 90254
Institutional support: RVO:61388963
Keywords : apo-holo * protein structure * ligands * binding sites * drug design
Impact factor: 5.6, year: 2022
Method of publishing: Limited access
https://doi.org/10.1016/j.jmb.2024.168545
Permanent Link: https://hdl.handle.net/11104/0352895 - 2.0584248 - BC 2024 RIV US eng J - Journal Article
Neumann, Pavel - Oliveira, Ludmila - Jang, Tae-Soo - Novák, Petr - Koblížková, Andrea - Schubert, V. - Houben, A. - Macas, Jiří
Disruption of the standard kinetochore in holocentric Cuscuta species.
Proceedings of the National Academy of Sciences of the United States of America. Roč. 120, č. 21 (2023), č. článku e2300877120. ISSN 0027-8424. E-ISSN 1091-6490
R&D Projects: GA ČR(CZ) GA20-25440S; GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : kinetochore * centromere * holocentric * monocentric * Cuscuta
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 11.1, year: 2022
Method of publishing: Open access
https://www.pnas.org/doi/10.1073/pnas.2300877120
Permanent Link: https://hdl.handle.net/11104/0352329 - 3.0584246 - BC 2024 RIV US eng J - Journal Article
Macas, Jiří - Robledillo, Laura Avila - Kreplak, J. - Novák, Petr - Koblížková, Andrea - Vrbová, Iva - Burstin, J. - Neumann, Pavel
Assembly of the 81.6 Mb centromere of pea chromosome 6 elucidates the structure and evolution of metapolycentric chromosomes.
PLoS Genetics. Roč. 19, č. 2 (2023), č. článku e1010633. ISSN 1553-7404. E-ISSN 1553-7404
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : genome * kinetochore * duplication * annotation * generation * alignment * sequence * provides * shows * gene
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 4.5, year: 2022
Method of publishing: Open access
https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1010633
Permanent Link: https://hdl.handle.net/11104/0352322 - 4.0584200 - BC 2024 RIV US eng J - Journal Article
Edwards, A. - Njaci, I. - Sarkar, A. - Jiang, Z. - Kaithakottil, G. G. - Moore, C. - Cheema, J. - Stevenson, C. E. M. - Rejzek, M. - Novák, Petr - Vigouroux, M. - Vickers, M. - Wouters, R. H. M. - Paajanen, P. - Steuernagel, B. - Moore, J. D. - Higgins, J. - Swarbreck, D. - Martens, S. - Kim, C. Y. - Weng, J. - Mundree, S. - Kilian, B. - Kumar, S. - Loose, M. - Yant, L. - Macas, Jiří - Wang, T. L. - Martin, C. - Emmrich, P. M. F.
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus.
Nature Communications. Roč. 14, č. 1 (2023), č. článku 5199. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:60077344
Keywords : Grass pea (Lathyrus sativus L.) * L. sativus genome * biosynthetic pathway * neurotoxin
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 16.6, year: 2022
Method of publishing: Open access
https://www.nature.com/articles/s41467-023-36503-2
Permanent Link: https://hdl.handle.net/11104/0352311 - 5.0582513 - MBÚ 2024 RIV CZ eng J - Journal Article
Jelínek, L. - Modrák, Martin - Ramík, Z. - Štos, L. - Pavlů, L. - Václavík, J. - Sovová, E.
Relationship between Functional Capacity and Medication Adherence in Heart Failure.
Cor et Vasa. Roč. 65, Supplement 3 (2023), s. 37-43. ISSN 0010-8650
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388971
Keywords : nyha classification * exercise * nonadherence * adults * Adherence * Cardiopulmonary exercise testing * Chronic heart failure * Drug therapy * Serum drug levels
OECD category: Microbiology
Impact factor: 0.2, year: 2022
Method of publishing: Open access
https://e-coretvasa.cz/artkey/cor-202390-0003_relationship-between-functional-capacity-and-medication-adherence-in-heart-failure.php
Permanent Link: https://hdl.handle.net/11104/0350684 - 6.0580412 - ÚŽFG 2024 RIV DE eng J - Journal Article
Voleníková, Anna - Lukšíková, Karolína - Mora, P. - Pavlica, Tomáš - Altmanová, Marie - Štundlová, Jana - Pelikánová, Šárka - Simanovsky, S. A. - Jankásek, Marek - Reichard, Martin - Nguyen, Petr - Sember, Alexandr
Fast satellite DNA evolution in Nothobranchius annual killifishes.
Chromosome Research. Roč. 31, č. 4 (2023), č. článku 33. ISSN 0967-3849. E-ISSN 1573-6849
R&D Projects: GA ČR(CZ) GJ19-22346Y; GA MŠMT(CZ) LM2018131
Research Infrastructure: ELIXIR-CZ II - 90131; e-INFRA CZ - 90140
Institutional support: RVO:67985904 ; RVO:68081766
Keywords : centromere drive * constitutive heterochromatin * repeatExplorer * repetitive sequences * satDNA
OECD category: Genetics and heredity (medical genetics to be 3); Zoology (UBO-W)
Impact factor: 2.6, year: 2022
Method of publishing: Open access
https://link.springer.com/article/10.1007/s10577-023-09742-8
Permanent Link: https://hdl.handle.net/11104/0349187File Download Size Commentary Version Access 0580412.pdf 0 6.7 MB Publisher’s postprint open-access - 7.0576841 - ÚMG 2025 RIV US eng J - Journal Article
Janečková, Lucie - Knotek, Tomáš - Kriška, Ján - Heřmanová, Zuzana - Kirdajová, Denisa - Kubovčiak, Jan - Berková, Linda - Turečková, Jana - Garcia, Camacho, Sara - Galušková, Kateřina - Kolář, Michal - Anděrová, Miroslava - Kořínek, Vladimír
Astrocyte-like subpopulation of NG2 glia in the adult mouse cortex exhibits characteristics of neural progenitor cells.
Glia. Roč. 72, č. 2 (2024), s. 245-273. ISSN 0894-1491. E-ISSN 1098-1136
R&D Projects: GA ČR(CZ) GA21-24674S; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) LM2023050; GA MŠMT(CZ) EF18_046/0016045
Institutional support: RVO:68378050 ; RVO:68378041
Keywords : chondroitin sulfate proteoglycan 4 * focal cerebral ischemia * neurogenesis * NG2 glia heterogeneity * oligodendrocyte precursor cell * single-cell RNA sequencing
OECD category: Cell biology; Neurosciences (including psychophysiology (UEM-P)
Impact factor: 6.2, year: 2022
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1002/glia.24471
Permanent Link: https://hdl.handle.net/11104/0348332 - 8.0574682 - MBÚ 2024 RIV GB eng J - Journal Article
Lopez Marin, M. A. - Šuman, J. - Jani, K. - Ulbrich, P. - Cajthaml, Tomáš - Filipová, Alena - Pajer, P. - Neumann-Schaal, M. - Strejček, M. - Uhlík, O.
Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant.
International Journal of Systematic and Evolutionary Microbiology. Roč. 73, č. 1 (2023), č. článku 005678. ISSN 1466-5026. E-ISSN 1466-5034
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388971
Keywords : compost soil * extracellular organic matter * Nocardioidaceae * resuscitation-promoting factor * soil bacteria * whole-genome average nucleotide identity
OECD category: Microbiology
Impact factor: 2.8, year: 2022
Method of publishing: Limited access
https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.005678
Permanent Link: https://hdl.handle.net/11104/0347501 - 9.0574419 - ÚMG 2024 RIV GB eng J - Journal Article
Kubovčiak, Jan - Kolář, Michal - Novotný, Jiří
Scdrake: a reproducible and scalable pipeline for scRNA-seq data analysis.
Bioinformatics Advances. Roč. 3, č. 1 (2023), č. článku vbad089. E-ISSN 2635-0041
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_019/0000785; GA MŠMT LX22NPO5102
Institutional support: RVO:68378050
Keywords : scRNA-seq data analysis * scdrake * R language
OECD category: Biochemistry and molecular biology
Method of publishing: Open access
https://academic.oup.com/bioinformaticsadvances/article/3/1/vbad089/7220500?login=true
Permanent Link: https://hdl.handle.net/11104/0344748File Download Size Commentary Version Access bioinformatics adv.-kubovciak-2023.pdf 0 384.7 KB Publisher’s postprint open-access - 10.0573624 - ÚOCHB 2024 RIV GB eng J - Journal Article
Galgonek, Jakub - Vondrášek, Jiří
A comparison of approaches to accessing existing biological and chemical relational databases via SPARQL.
Journal of Cheminformatics. Roč. 15, č. 1 (2023), č. článku 61. ISSN 1758-2946. E-ISSN 1758-2946
R&D Projects: GA MŠMT(CZ) LM2018131
Institutional support: RVO:61388963
Keywords : Resource Description Framework * relational database * RDB-to-RDF mapping * SPARQL
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 8.6, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s13321-023-00729-5
Permanent Link: https://hdl.handle.net/11104/0344026