Search results
- 1.0559713 - ÚOCHB 2023 RIV US eng J - Journal Article
Vymětal, Jiří - Mertová, Kateřina - Boušová, Kristýna - Šulc, Josef - Tripsianes, K. - Vondrášek, Jiří
Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x-ray reference structures as a prediction benchmark.
Proteins-Structure, Function and Bioinformatics. Roč. 90, č. 12 (2022), s. 2067-2079. ISSN 0887-3585. E-ISSN 1097-0134
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA19-03488S
Research Infrastructure: e-INFRA CZ - 90140
Institutional support: RVO:61388963
Keywords : 3D structure prediction * fusion proteins * molecular simulations * X-ray crystallography
OECD category: Biochemistry and molecular biology
Impact factor: 2.9, year: 2022
Method of publishing: Open access
https://doi.org/10.1002/prot.26398
Permanent Link: https://hdl.handle.net/11104/0332921 - 2.0548806 - ÚEB 2022 RIV GB eng J - Journal Article
Yperman, K. - Papageorgiou, A. - Merceron, R. - De Munck, S. - Bloch, Y. - Eeckhout, D. - Jiang, Q. - Tack, P. - Grigoryan, R. - Evangelidis, T. - Van Leene, J. - Vincze, L. - Vandenabeele, P. - Vanhaecke, F. - Potocký, Martin - De Jaeger, G. - Savvides, S. N. - Tripsianes, K. - Pleskot, Roman - Van Damme, D.
Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding.
Nature Communications. Roč. 12, č. 1 (2021), č. článku 3050. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LQ1601; GA MŠMT(CZ) LM2018127
Institutional support: RVO:61389030
Keywords : PHOSPHATIDIC-ACID * IDENTIFICATION * EXPRESSION
OECD category: Biochemistry and molecular biology
Impact factor: 17.694, year: 2021
Method of publishing: Open access
http://doi.org/10.1038/s41467-021-23314-6
Permanent Link: http://hdl.handle.net/11104/0324854File Download Size Commentary Version Access 2021_Yperman_NATURE COMMUNICATIONS_3050.pdf 1 2.1 MB Other open-access - 3.0543260 - ÚOCHB 2022 RIV US eng J - Journal Article
Boušová, Kristýna - Bednárová, Lucie - Zouharová, Monika - Vetýšková, Veronika - Poštulková, Klára - Hofbauerová, Kateřina - Petrvalská, Olivia - Vaněk, O. - Tripsianes, K. - Vondrášek, Jiří
The order of PDZ3 and TrpCage in fusion chimeras determines their properties—a biophysical characterization.
Protein Science. Roč. 30, č. 8 (2021), s. 1653-1666. ISSN 0961-8368. E-ISSN 1469-896X
R&D Projects: GA MŠMT(CZ) EF16_019/0000729; GA ČR(CZ) GA19-03488S
Institutional support: RVO:61388963 ; RVO:61388971 ; RVO:67985823
Keywords : chimeras * fusion protein * protein domains * protein dynamic studies
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (FGU-C)
Impact factor: 6.993, year: 2021
Method of publishing: Limited access
https://doi.org/10.1002/pro.4107
Permanent Link: http://hdl.handle.net/11104/0320500 - 4.0541958 - BFÚ 2022 RIV GB eng J - Journal Article
Jurasek, M. - Kumar, J. - Paclíková, P. - Kumari, A. - Tripsianes, K. - Bryja, Vítězslav - Vácha, R.
Phosphorylation-induced changes in the PDZ domain of Dishevelled 3.
Scientific Reports. Roč. 11, č. 1 (2021), č. článku 1484. ISSN 2045-2322. E-ISSN 2045-2322
Institutional support: RVO:68081707
Keywords : human phosphatase hptp1e * particle mesh ewald * protein interactions * ligand recognition * par-6 pdz * binding
OECD category: Other biological topics
Impact factor: 4.997, year: 2021
Method of publishing: Open access
https://www.nature.com/articles/s41598-020-79398-5
Permanent Link: http://hdl.handle.net/11104/0319474 - 5.0523203 - BFÚ 2020 RIV GB eng J - Journal Article
Hanakova, K. - Bernatík, O. - Kravec, M. - Micka, M. - Kumar, J. - Harnoš, J. - Ovesná, J. - Paclíková, P. - Radsetoulal, M. - Potěšil, D. - Tripsianes, K. - Čajánek, L. - Zdráhal, Z. - Bryja, Vítězslav
Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs.
Cell communication and signaling : CCS. Roč. 17, č. 1 (2019), č. článku 170. E-ISSN 1478-811X
Institutional support: RVO:68081707
Keywords : protein-kinase * cell-cycle * wnt pathway
OECD category: Cell biology
Impact factor: 4.344, year: 2019
Method of publishing: Open access
https://biosignaling.biomedcentral.com/articles/10.1186/s12964-019-0470-z
Permanent Link: http://hdl.handle.net/11104/0307585 - 6.0520259 - BFÚ 2020 RIV GB eng J - Journal Article
Harnoš, J. - Canizal, M.C.A. - Jurasek, M. - Kumar, J. - Holler, C. - Schambony, A. - Hanakova, K. - Bernatík, O. - Zdráhal, Z. - Gomoryova, K. - Gybel, T. - Radaszkiewicz, T.W. - Kravec, M. - Trantírek, Lukáš - Ryneš, J. - Dave, Z. - Fernandez-Llamazares, A.I. - Vácha, R. - Tripsianes, K. - Hoffmann, C. - Bryja, Vítězslav
Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1.
Nature Communications. Roč. 10, APR 2019 (2019), č. článku 1804. E-ISSN 2041-1723
R&D Projects: GA MŠMT EF15_003/0000477
Institutional support: RVO:68081707
Keywords : particle mesh ewald * beta-catenin * wnt/beta-catenin * dix domain
OECD category: Biochemical research methods
Impact factor: 12.121, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41467-019-09651-7.pdf
Permanent Link: http://hdl.handle.net/11104/0304964