Search results
- 1.0574529 - BTÚ 2024 RIV GB eng J - Journal Article
Svoboda, Jakub - Berdár, Daniel - Kolenko, Petr - Černý, Jiří - Nováková, Zora - Pavlíček, Jiří - Schneider, Bohdan
Conformation-based refinement of 18-mer DNA structures.
Acta Crystallographica Section D-Biological Crystallography. Roč. 79, JUL 2023 (2023), s. 655-665. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT EF16_019/0000778
Institutional support: RVO:86652036
Keywords : DNA structure * dnatco.datmos.org * structure validation * structure refinement * base pairing
OECD category: Biochemistry and molecular biology
Impact factor: 2.2, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798323004679
Permanent Link: https://hdl.handle.net/11104/0345411 - 2.0560262 - BTÚ 2023 RIV GB eng J - Journal Article
Biedermannová, Lada - Černý, Jiří - Malý, Michal - Nekardová, Michaela - Schneider, Bohdan
Knowledge-based prediction of DNA hydration using hydrated dinucleotides as building blocks.
Acta Crystallographica Section D-Biological Crystallography. Roč. 78, AUG 1 2022 (2022), s. 1032-1045. ISSN 1399-0047. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) LM2018131
Institutional support: RVO:86652036
Keywords : DNA hydration * water * dinucleotide fragments * knowledge-based prediction * WatNA
OECD category: Analytical chemistry
Impact factor: 2.2, year: 2022
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798322006234
Permanent Link: https://hdl.handle.net/11104/0333870 - 3.0540782 - BTÚ 2021 RIV GB eng J - Journal Article
Kolenko, Petr - Svoboda, Jakub - Černý, Jiří - Charnavets, Tatsiana - Schneider, Bohdan
Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallographica Section D-Structural Biology. Roč. 76, DEC 1 2020 (2020), s. 1233-1243. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : DNA structure * noncanonical base pairs * T– * T mismatch
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798320014151
Permanent Link: http://hdl.handle.net/11104/0318385 - 4.0535408 - BTÚ 2021 RIV GB eng J - Journal Article
Černý, Jiří - Božíková, Paulina - Malý, Michal - Tykač, Michal - Biedermannová, Lada - Schneider, Bohdan
Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org.
Acta Crystallographica Section D-Structural Biology. Roč. 76, SEP 1 2020 (2020), s. 805-813. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : secondary structure * rna * nomenclature * recognition * refinement
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://journals.iucr.org/d/issues/2020/09/00/ir5007/ir5007.pdf
Permanent Link: http://hdl.handle.net/11104/0313442 - 5.0535402 - BTÚ 2021 RIV GB eng J - Journal Article
Černý, Jiří - Božíková, Paulina - Svoboda, Jakub - Schneider, Bohdan
A unified dinucleotide alphabet describing both RNA and DNA structures.
Nucleic Acids Research. Roč. 48, č. 11 (2020), s. 6367-6381. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:86652036
Keywords : resolution structure * angstrom resolution * secondary structure * crystal-structure * building-blocks
OECD category: Biochemistry and molecular biology
Impact factor: 16.971, year: 2020
Method of publishing: Open access
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7293047/
Permanent Link: http://hdl.handle.net/11104/0313444