Search results

  1. 1.
    0557781 - BFÚ 2023 RIV FR eng J - Journal Article
    Bohalova, Natalia - Dobrovolná, Michaela - Brázda, Václav - Bidula, S.
    Conservation and over-representation of G-quadruplex sequences in regulatory regions of mitochondrial DNA across distinct taxonomic sub-groups.
    Biochimie. Roč. 194, MAR 2022 (2022), s. 28-34. ISSN 0300-9084. E-ISSN 1638-6183
    R&D Projects: GA ČR(CZ) GA18-15548S
    Institutional support: RVO:68081707
    Keywords : r-loops * rna * sites * Mitochondria * Genome
    OECD category: Biochemistry and molecular biology
    Impact factor: 3.9, year: 2022
    Method of publishing: Limited access
    https://www.sciencedirect.com/science/article/pii/S0300908421002947?via%3Dihub
    Permanent Link: https://hdl.handle.net/11104/0339565
     
     
  2. 2.
    0555649 - BFÚ 2022 RIV GB eng J - Journal Article
    Bartas, M. - Goswami, Pratik - Lexa, M. - Cerven, J. - Volna, A. - Fojta, Miroslav - Brázda, Václav - Pečinka, P.
    Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains.
    Briefings in Bioinformatics. Roč. 22, č. 5 (2021), č. článku bbab129. ISSN 1467-5463. E-ISSN 1477-4054
    R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : SARS-CoV-2 * mutations * inverted repeats
    OECD category: Biochemistry and molecular biology
    Impact factor: 13.994, year: 2021
    Method of publishing: Open access
    https://academic.oup.com/bib/article/22/5/bbab129/6219140
    Permanent Link: http://hdl.handle.net/11104/0330106
     
     
  3. 3.
    0555382 - BFÚ 2022 RIV GB eng J - Journal Article
    Goswami, Pratik - Bartas, M. - Lexa, M. - Bohalova, Natalia - Volna, A. - Cerven, J. - Cervenova, V. - Pečinka, P. - Špunda, Vladimír - Fojta, Miroslav - Brázda, Václav
    SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci.
    Briefings in Bioinformatics. Roč. 22, č. 2 (2021), s. 1338-1345. ISSN 1467-5463. E-ISSN 1477-4054
    R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : dna * rna * methylation * genotype * protein * search
    OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (UEK-B)
    Impact factor: 13.994, year: 2021
    Method of publishing: Open access
    https://academic.oup.com/bib/article/22/2/1338/6042389
    Permanent Link: http://hdl.handle.net/11104/0329900
     
     
  4. 4.
    0554894 - BFÚ 2022 RIV FR eng J - Journal Article
    Bohalova, Natalia - Cantara, Alessio - Bartas, M. - Kaura, P. - Šťastný, J. - Pečinka, P. - Fojta, Miroslav - Mergny, Jean-Louis - Brázda, Václav
    Analyses of viral genomes for G-quadruplex forming sequences reveal their correlation with the type of infection.
    Biochimie. Roč. 186, JUL 2021 (2021), s. 13-27. ISSN 0300-9084. E-ISSN 1638-6183
    R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : rna * replication * promoter * viruses * binding * zika * G-quadruplex
    OECD category: Biochemistry and molecular biology
    Impact factor: 4.372, year: 2021
    Method of publishing: Open access
    https://www.sciencedirect.com/science/article/pii/S0300908421000961?via%3Dihub
    Permanent Link: http://hdl.handle.net/11104/0329513
     
     
  5. 5.
    0554786 - BFÚ 2022 RIV CH eng J - Journal Article
    Bartas, M. - Brázda, Václav - Volna, A. - Cerven, J. - Pečinka, P. - Zawacka-Pankau, J.
    The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity.
    International Journal of Molecular Sciences. Roč. 22, č. 16 (2021), č. článku 8512. E-ISSN 1422-0067
    R&D Projects: GA ČR(CZ) GA18-15548S
    Institutional support: RVO:68081707
    Keywords : life-history * cancer * dna * tp53 * senescence
    OECD category: Biochemistry and molecular biology
    Impact factor: 6.208, year: 2021
    Method of publishing: Open access
    https://www.mdpi.com/1422-0067/22/16/8512
    Permanent Link: http://hdl.handle.net/11104/0329435
     
     
  6. 6.
    0551529 - BFÚ 2023 RIV NL eng J - Journal Article
    Brázda, Václav - Bohalova, Natalia - Bowater, R. P.
    New telomere to telomere assembly of human chromosome 8 reveals a previous underestimation of G-quadruplex forming sequences and inverted repeats.
    Gene. Roč. 810, FEB 5 2022 (2022), č. článku 146058. ISSN 0378-1119. E-ISSN 1879-0038
    R&D Projects: GA ČR(CZ) GA18-15548S
    Institutional support: RVO:68081707
    Keywords : messenger-rna * dna * G-quadruplex * Inverted repeat * Genome sequence of human chromosome 8 * Non-B DNA structures
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 3.5, year: 2022
    Method of publishing: Open access
    https://www.sciencedirect.com/science/article/pii/S0378111921006533?via%3Dihub
    Permanent Link: https://hdl.handle.net/11104/0340615
     
     
  7. 7.
    0544549 - BFÚ 2022 RIV NL eng J - Journal Article
    Brázda, Václav - Bartas, M. - Bowater, R. P.
    Evolution of Diverse Strategies for Promoter Regulation.
    Trends in Genetics. Roč. 37, č. 8 (2021), s. 730-744. ISSN 0168-9525. E-ISSN 1362-4555
    R&D Projects: GA ČR(CZ) GA18-15548S
    Institutional support: RVO:68081707
    Keywords : inverted repeat sequences * g-quadruplex structures * dna g-quadruplex * non-b dna * gene-regulation * transposable elements
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 11.821, year: 2021
    Method of publishing: Open access
    https://www.sciencedirect.com/science/article/pii/S0168952521000846
    Permanent Link: http://hdl.handle.net/11104/0321397
     
     
  8. 8.
    0542171 - BFÚ 2022 RIV CH eng J - Journal Article
    Bohalova, Natalia - Cantara, Alessio - Bartas, M. - Kaura, P. - Šťastný, J. - Pečinka, P. - Fojta, Miroslav - Brázda, Václav
    Tracing dsDNA Virus-Host Coevolution through Correlation of Their G-Quadruplex-Forming Sequences.
    International Journal of Molecular Sciences. Roč. 22, č. 7 (2021), č. článku 3433. E-ISSN 1422-0067
    R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : G-quadruplex * virus * bioinformatics * coevolution * host * dsDNA * G4Hunter
    OECD category: Biochemistry and molecular biology
    Impact factor: 6.208, year: 2021
    Method of publishing: Open access
    https://www.mdpi.com/1422-0067/22/7/3433
    Permanent Link: http://hdl.handle.net/11104/0319647
     
     
  9. 9.
    0541574 - BFÚ 2022 RIV CH eng J - Journal Article
    Monti, P. - Brázda, Václav - Bohalova, Natalia - Porubiakova, Otilia - Menichini, P. - Speciale, A. - Bocciardi, R. - Inga, A. - Fronza, G.
    Evaluating the Influence of a G-Quadruplex Prone Sequence on the Transactivation Potential by Wild-Type and/or Mutant P53 Family Proteins through a Yeast-Based Functional Assay.
    Genes. Roč. 12, č. 2 (2021), č. článku 277. E-ISSN 2073-4425
    R&D Projects: GA ČR(CZ) GA18-15548S
    Institutional support: RVO:68081707
    Keywords : P53 family * yeast * G-quadruplex (G4) prone sequence * wild-type and mutant P53 * P63 proteins * transactivation potential
    OECD category: Genetics and heredity (medical genetics to be 3)
    Impact factor: 4.141, year: 2021
    Method of publishing: Open access
    https://www.mdpi.com/2073-4425/12/2/277
    Permanent Link: http://hdl.handle.net/11104/0319117
     
     
  10. 10.
    0539893 - BFÚ 2021 RIV GB eng J - Journal Article
    Brázda, Václav - Kolomaznik, J. - Mergny, Jean-Louis - Šťastný, J.
    G4Killer web application: a tool to design G-quadruplex mutations.
    Bioinformatics. Roč. 36, č. 10 (2020), s. 3246-3247. ISSN 1367-4803. E-ISSN 1460-2059
    R&D Projects: GA ČR(CZ) GA18-15548S; GA MŠMT EF15_003/0000477
    Institutional support: RVO:68081707
    Keywords : G4Killer * web application * G-quadruplex mutations
    OECD category: Biochemistry and molecular biology
    Impact factor: 6.937, year: 2020
    Method of publishing: Open access
    https://academic.oup.com/bioinformatics/article/36/10/3246/5716328
    Permanent Link: http://hdl.handle.net/11104/0317588
     
     

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