Search results
- 1.0583805 - BC 2024 RIV GB eng J - Journal Article
Kavagutti, Vinicius Silva - Bulzu, Paul-Adrian - Chiriac, Maria-Cecilia - Salcher, Michaela M. - Mukherjee, Indranil - Shabarova, Tatiana - Grujčič, Vesna - Mehrshad, Maliheh - Kasalický, Vojtěch - Andrei, A.S. - Jezberová, Jitka - Seďa, Jaromír - Rychtecký, Pavel - Znachor, Petr - Šimek, Karel - Ghai, Rohit
High-resolution metagenomic reconstruction of the freshwater spring bloom.
Microbiome. Roč. 11, č. 1 (2023), č. článku 15. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA21-21990S; GA ČR(CZ) GA19-23469S; GA ČR GA22-03662S; GA ČR(CZ) GA19-23261S; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : bacterioplankton populations * seasonal succession * giant virus * chrysochromulina
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-022-01451-4
Permanent Link: https://hdl.handle.net/11104/0351803 - 2.0583794 - BC 2024 RIV GB eng J - Journal Article
Park, Hongjae - Shabarova, Tatiana - Salcher, Michaela M. - Kosová, Lenka - Rychtecký, Pavel - Mukherjee, Indranil - Šimek, Karel - Porcal, Petr - Seďa, Jaromír - Znachor, Petr - Kasalický, Vojtěch
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model.
Microbiome. Roč. 11, č. 1 (2023), č. článku 112. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GA19-00113S; GA MŠMT(CZ) EF16_025/0007417; GA ČR GA22-33245S; GA ČR GF22-35826K
Institutional support: RVO:60077344
Keywords : rna gene-sequences * niche separation * Freshwater reservoirs * Microbial communities * Spatiotemporal dynamics * Microdiversity * PEG model
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-023-01522-0
Permanent Link: https://hdl.handle.net/11104/0351793 - 3.0583779 - BC 2024 RIV US eng J - Journal Article
Chiriac, Maria-Cecilia - Haber, Markus - Salcher, Michaela M.
Adaptive genetic traits in pelagic freshwater microbes.
Environmental Microbiology. Roč. 25, č. 3 (2023), s. 606-641. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA21-21990S; GA ČR GA22-03662S
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * ribosomal-rna genes * polynucleobacter-necessarius * bacterial communities * planktonic flavobacteria * oxygenated hypolimnion * actinorhodopsin genes
OECD category: Microbiology
Impact factor: 5.1, year: 2022
Method of publishing: Open access
Permanent Link: https://hdl.handle.net/11104/0351781 - 4.0558631 - BC 2023 RIV GB eng J - Journal Article
Chiriac, Maria-Cecilia - Bulzu, Paul-Adrian - Andrei, A.S. - Okazaki, Y. - Nakano, S. - Haber, Markus - Kavagutti, Vinicius Silva - Layoun, Paul - Ghai, Rohit - Salcher, Michaela M.
Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR.
Microbiome. Roč. 10, č. 1 (2022), č. článku 84. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GA21-21990S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : multiple sequence alignment * in-situ hybridization * ribosomal-rna * protein secretion * database * genome * identification * bacteria * symbionts * resource * Patescibacteria * cpr * Freshwater lakes * Metagenomics * Genome reduction * Metabolism * Lifestyle * card-fish
OECD category: Ecology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-022-01274-3
Permanent Link: https://hdl.handle.net/11104/0340290 - 5.0552456 - BC 2022 RIV GB eng J - Journal Article
Okazaki, Y. - Fujinaga, S. - Salcher, Michaela M. - Callieri, C. - Tanaka, A. - Kohzu, A. - Oyagi, H. - Tamaki, H. - Nakano, S.
Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing.
Microbiome. Roč. 9, č. 1 (2021), č. článku 24. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : Freshwater bacterioplankton * Long-read amplicon sequencing * Microdiversity * PacBio * Phylogeography * Ribosomal internal transcribed spacers
OECD category: Microbiology
Impact factor: 16.837, year: 2021
Method of publishing: Open access
https://doi.org/10.1186/s40168-020-00974-y
Permanent Link: http://hdl.handle.net/11104/0327581 - 6.0552451 - BC 2022 RIV GB eng J - Journal Article
Shabarova, Tatiana - Salcher, Michaela M. - Porcal, Petr - Znachor, Petr - Nedoma, Jiří - Grossart, H.P. - Seďa, Jaromír - Hejzlar, Josef - Šimek, Karel
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession.
Nature Microbiology. Roč. 6, č. 4 (2021), s. 479-+. ISSN 2058-5276. E-ISSN 2058-5276
R&D Projects: GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * ribosomal-rna * peg-model * lake * assemblages * phosphorus * projections * reservoirs * emissions * silva
OECD category: Microbiology
Impact factor: 30.964, year: 2021
Method of publishing: Limited access
https://doi.org/10.1038/s41564-020-00852-1
Permanent Link: http://hdl.handle.net/11104/0327580File Download Size Commentary Version Access SHABAROVA NatureMicrobiol 2021.pdf 0 13.8 MB Author´s preprint require - 7.0546949 - MBÚ 2022 RIV US eng J - Journal Article
Mujakić, Izabela - Andrei, Adrian-Stefan - Shabarova, Tatiana - Kolesár Fecskeová, Lívia - Salcher, Michaela M. - Piwosz, Kasia - Ghai, Rohit - Koblížek, Michal
Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes.
mSystems. Roč. 6, č. 2 (2021), č. článku e01241-20. ISSN 2379-5077. E-ISSN 2379-5077
R&D Projects: GA ČR(CZ) GX19-28778X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Grant - others:AV ČR(CZ) MSM200961801
Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : Gemmatimonadota * Gemmatimonadetes * anoxygenic phototrophs * aquatic bacteria * MAGs * metagenome * photosynthesis gene cluster * freshwater ecology * card-fish
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 7.328, year: 2021
Method of publishing: Open access
https://journals.asm.org/doi/10.1128/mSystems.01241-20
Permanent Link: http://hdl.handle.net/11104/0323331 - 8.0542712 - MBÚ 2022 RIV CH eng J - Journal Article
Piwosz, Kasia - Mukherjee, Indranil - Salcher, Michaela M. - Grujcic, V. - Šimek, Karel
CARD-FISH in the Sequencing Era: Opening a New Universe of Protistan Ecology.
Frontiers in Microbiology. Roč. 12, MAR 4 2021 (2021), č. článku 640066. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA MŠMT(CZ) EF16_025/0007417; GA ČR(CZ) GA13-00243S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : aquatic microbial food webs * card-fish * grazing by protists * protists * unicellular eukaryotes * bacterivorous * omnivorous and predatory flagellates * heterotrophic and mixotrophic flagellates
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 6.064, year: 2021
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fmicb.2021.640066/full
Permanent Link: http://hdl.handle.net/11104/0320081 - 9.0539257 - BC 2021 RIV GB eng J - Journal Article
Mukherjee, Indranil - Salcher, Michaela M. - Andrei, Adrian-Stefan - Kavagutti, Vinicius Silva - Shabarova, Tatiana - Grujcic, V. - Haber, Markus - Layoun, Paul - Hodoki, Y. - Nakano, S. - Šimek, Karel - Ghai, Rohit
A freshwater radiation of diplonemids.
Environmental Microbiology. Roč. 22, č. 11 (2020), s. 4658-4668. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GA19-23469S
Grant - others:AV ČR(CZ) MSM200961801
Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:60077344
Keywords : multiple sequence alignment * microbial eukaryotes * marine * community * diversity
OECD category: Microbiology
Impact factor: 5.491, year: 2020
Method of publishing: Open access
https://doi.org/10.1111/1462-2920.15209
Permanent Link: http://hdl.handle.net/11104/0316927File Download Size Commentary Version Access MUKHERJEE Environ Microbiol 2020.pdf 0 1 MB Author´s preprint open-access - 10.0538849 - BC 2021 RIV CH eng J - Journal Article
Di Cesare, A. - Dzhembekova, N. - Cabello-Yeves, P.J. - Eckert, E.M. - Slabakova, V. - Slabakova, N. - Peneva, E. - Bertoni, R. - Corno, G. - Salcher, Michaela M. - Kamburska, L. - Bertoni, F. - Rodriguez-Valera, F. - Moncheva, S. - Callieri, C.
Genomic comparison and spatial distribution of different Synechococcus phylotypes in the Black Sea.
Frontiers in Microbiology. Roč. 11, č. 8 (2020), s. 1-14, č. článku 1979. ISSN 1664-302X. E-ISSN 1664-302X
R&D Projects: GA ČR(CZ) GA19-23469S
Institutional support: RVO:60077344
Keywords : marine Synechococcus spp. * rpoC1 * qPCR * mesopelagic Black Sea * epipelagic Black Sea
OECD category: Microbiology
Impact factor: 5.640, year: 2020
Method of publishing: Open access
https://doi.org/10.3389/fmicb.2020.01979
Permanent Link: http://hdl.handle.net/11104/0316567File Download Size Commentary Version Access DiCesare SALCHER FrontMic 2020.pdf 0 3.1 MB Author´s preprint open-access