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- 1.0584688 - ÚOCHB 2025 RIV US eng J - Journal Article
Fábián, Balázs - Javanainen, Matti
Diffusion Analyses along Mean and Gaussian-Curved Membranes with CurD.
Journal of Physical Chemistry Letters. Roč. 15, č. 11 (2024), s. 3214-3220. ISSN 1948-7185
R&D Projects: GA ČR(CZ) GX19-26854X
Institutional support: RVO:61388963
Keywords : coarse-grained model * lipid-bilayers * curvature
Impact factor: 5.7, year: 2022
Method of publishing: Limited access
https://doi.org/10.1021/acs.jpclett.4c00338
Permanent Link: https://hdl.handle.net/11104/0352761 - 2.0581631 - ÚOCHB 2025 RIV US eng J - Journal Article
Martin, A. - Tempra, Carmelo - Yu, Y. - Liekkinen, J. - Thakker, R. - Lee, H. - de Santos Moreno, B. - Vattulainen, I. - Rossios, C. - Javanainen, Matti - de la Serna, J. B.
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function.
Environmental Science & Technology. Roč. 58, č. 3 (2024), s. 1495-1508. ISSN 0013-936X. E-ISSN 1520-5851
Institutional support: RVO:61388963
Keywords : e-cigarettes * vaping * lung surfactant * inhalation toxicology * mechanistic toxicology * exposure and human health
OECD category: Physical chemistry
Method of publishing: Open access
https://doi.org/10.1021/acs.est.3c07874
Permanent Link: https://hdl.handle.net/11104/0349740 - 3.0578251 - ÚOCHB 2025 RIV NL eng J - Journal Article
Saija, M. C. - Melcrová, A. - Pajerski, W. - Schachter, Itay - Javanainen, Matti - Cebecauer, M. - Cwiklik, Lukasz
Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study.
Biophysical Chemistry. Roč. 304, January (2024), č. článku 107124. ISSN 0301-4622. E-ISSN 1873-4200
R&D Projects: GA ČR(CZ) GX19-26854X
Institutional support: RVO:61388963
Keywords : PAG * membranes * palmitoylation * lipid membrane phases * MD simulations
OECD category: Biophysics
Impact factor: 3.8, year: 2022
Method of publishing: Limited access
https://doi.org/10.1016/j.bpc.2023.107124
Permanent Link: https://hdl.handle.net/11104/0347277 - 4.0576127 - ÚOCHB 2024 RIV US eng J - Journal Article
Biriukov, Denys - Javanainen, Matti
Efficient Simulations of Solvent Asymmetry Across Lipid Membranes Using Flat-Bottom Restraints.
Journal of Chemical Theory and Computation. Roč. 19, č. 18 (2023), s. 6332-6341. ISSN 1549-9618. E-ISSN 1549-9626
R&D Projects: GA MŠMT(CZ) LX22NPO5103
Institutional support: RVO:61388963
Keywords : linear constraint solver * particle mesh Ewald * molecular dynamics
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jctc.3c00614
Permanent Link: https://hdl.handle.net/11104/0345727File Download Size Commentary Version Access 10.1021acs.jctc.3c00614.pdf 0 4.7 MB Publisher’s postprint open-access - 5.0575757 - ÚOCHB 2024 RIV US eng J - Journal Article
Javanainen, Matti - Heftberger, P. - Madsen, J. J. - Miettinen, M. S. - Pabst, G. - Ollila, O. H. S.
Quantitative Comparison against Experiments Reveals Imperfections in Force Fields’ Descriptions of POPC-Cholesterol Interactions.
Journal of Chemical Theory and Computation. Roč. 19, č. 18 (2023), s. 6342-6352. ISSN 1549-9618. E-ISSN 1549-9626
Institutional support: RVO:61388963
Keywords : molecular-dynamics simulations * lipid-bilayer structure * small-angle neutron
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jctc.3c00648
Permanent Link: https://hdl.handle.net/11104/0345487 - 6.0571957 - ÚOCHB 2024 RIV US eng J - Journal Article
Fábián, Balázs - Vattulainen, I. - Javanainen, Matti
Protein Crowding and Cholesterol Increase Cell Membrane Viscosity in a Temperature Dependent Manner.
Journal of Chemical Theory and Computation. Roč. 19, č. 9 (2023), s. 2630-2643. ISSN 1549-9618. E-ISSN 1549-9626
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * lateral diffusion * force field
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jctc.3c00060
Permanent Link: https://hdl.handle.net/11104/0342809 - 7.0570790 - ÚFCH JH 2024 RIV US eng J - Journal Article
Liekkinen, J. - Olžyńska, Agnieszka - Cwiklik, Lukasz - de la Serna, J. B. - Vattulainen, I. - Javanainen, Matti
Surfactant Proteins SP-B and SP-C in Pulmonary Surfactant Monolayers: Physical Properties Controlled by Specific Protein-Lipid Interactions.
Langmuir. Roč. 39, č. 12 (2023), s. 4338-4350. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GA21-19854S
Institutional support: RVO:61388955 ; RVO:61388963
Keywords : Compression * Isotherms * Lipids
OECD category: Physical chemistry
Impact factor: 3.9, year: 2022
Method of publishing: Open access
Permanent Link: https://hdl.handle.net/11104/0342129File Download Size Commentary Version Access 0570790.pdf 0 8.5 MB open access Publisher’s postprint open-access - 8.0570657 - ÚOCHB 2024 RIV US eng J - Journal Article
Woodward, X. - Javanainen, Matti - Fábián, Balázs - Kelly, C. V.
Nanoscale membrane curvature sorts lipid phases and alters lipid diffusion.
Biophysical Journal. Roč. 122, č. 11 (2023), s. 2203-2215. ISSN 0006-3495. E-ISSN 1542-0086
Institutional support: RVO:61388963
Keywords : single-particle tracking * plasma membrane * lateral diffusion
OECD category: Physical chemistry
Impact factor: 3.4, year: 2022
Method of publishing: Limited access
https://doi.org/10.1016/j.bpj.2023.01.001
Permanent Link: https://hdl.handle.net/11104/0341985 - 9.0561693 - ÚOCHB 2023 RIV US eng J - Journal Article
Nguyen, Man Thi Hong - Biriukov, Denys - Tempra, Carmelo - Baxová, Katarína - Martinez-Seara, Hector - Evci, Huseyin - Singh, Vandana - Šachl, Radek - Hof, Martin - Jungwirth, Pavel - Javanainen, Matti - Vazdar, Mario
Ionic Strength and Solution Composition Dictate the Adsorption of Cell-Penetrating Peptides onto Phosphatidylcholine Membranes.
Langmuir. Roč. 38, č. 37 (2022), s. 11284-11295. ISSN 0743-7463
R&D Projects: GA ČR(CZ) GX19-26854X
Institutional support: RVO:61388963 ; RVO:61388955
Keywords : linear constraint solver * particle mesh Ewald * molecular dynamics
OECD category: Physical chemistry
Impact factor: 3.9, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.langmuir.2c01435
Permanent Link: https://hdl.handle.net/11104/0334213File Download Size Commentary Version Access 0561693.pdf 3 14.4 MB open access Publisher’s postprint open-access - 10.0556419 - ÚOCHB 2023 RIV US eng J - Journal Article
Tempra, Carmelo - Ollila, O. H. S. - Javanainen, Matti
Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension.
Journal of Chemical Theory and Computation. Roč. 18, č. 3 (2022), s. 1862-1869. ISSN 1549-9618. E-ISSN 1549-9626
Institutional support: RVO:61388963
Keywords : molecular dynamics simulations * linear constraint solver * polarizable force field
OECD category: Physical chemistry
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1021/acs.jctc.1c00951
Permanent Link: http://hdl.handle.net/11104/0330640