Search results
- 1.0583145 - BTÚ 2024 RIV CH eng J - Journal Article
Šimková, Kateřina - Naraine, Ravindra - Vintr, J. - Soukup, V. - Šindelka, Radek
RNA localization during early development of the axolotl.
Frontiers in Cell and Developmental Biology. Roč. 11, OCT 19 2023 (2023), č. článku 1260795. ISSN 2296-634X. E-ISSN 2296-634X
R&D Projects: GA ČR(CZ) GA20-23836S
Institutional support: RVO:86652036
Keywords : maternal messenger-rna * germ plasm component * vegetal cortex * mitochondrial cloud * animal-vegetal axis
OECD category: Developmental biology
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fcell.2023.1260795/full
Permanent Link: https://hdl.handle.net/11104/0351334 - 2.0563714 - BTÚ 2023 RIV CH eng J - Journal Article
Iegorova, Viktoriia - Naraine, Ravindra - Pšenička, M. - Zelazowska, M. - Šindelka, Radek
Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis.
Frontiers in Cell and Developmental Biology. Roč. 10, SEP 20 2022 (2022), č. článku 982732. ISSN 2296-634X. E-ISSN 2296-634X
R&D Projects: GA ČR(CZ) GA19-11313S
Research Infrastructure: CENAKVA - 90099
Institutional support: RVO:86652036
Keywords : oogenesis * RNA localization * Xenopus laevis * Acipenser ruthenus * TOMO-Seq
OECD category: Developmental biology
Impact factor: 5.5, year: 2022
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fcell.2022.982732/full
Permanent Link: https://hdl.handle.net/11104/0335725 - 3.0559401 - BTÚ 2023 RIV US eng J - Journal Article
Naraine, Ravindra - Iegorova, Viktoriia - Abaffy, Pavel - Franěk, R. - Soukup, V. - Pšenička, M. - Šindelka, Radek
Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq.
Developmental Biology. Roč. 489, SEP 2022 (2022), s. 146-160. ISSN 0012-1606. E-ISSN 1095-564X
R&D Projects: GA ČR(CZ) GA19-11313S
Institutional support: RVO:86652036
Keywords : Egg * RNA localization * TOMO-Seq * Amphibians * Fishes * evo devo
OECD category: Biochemistry and molecular biology
Impact factor: 2.7, year: 2022
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S0012160622001300?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340732 - 4.0558972 - BTÚ 2023 RIV CH eng J - Journal Article
Gazo, I. - Naraine, Ravindra - Lebeda, I. - Tomcala, Al. - Dietrich, M. - Franěk, R. - Pšenička, M. - Šindelka, Radek
Transcriptome and Proteome Analyses Reveal Stage-Specific DNA Damage Response in Embryos of Sturgeon (Acipenser ruthenus).
International Journal of Molecular Sciences. Roč. 23, č. 12 (2022), č. článku 6392. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA19-11313S
Institutional support: RVO:86652036
Keywords : fish * sturgeon * embryo * DNA damage response * omics
OECD category: Biochemistry and molecular biology
Impact factor: 5.6, year: 2022
Method of publishing: Open access
https://www.mdpi.com/1422-0067/23/12/6392
Permanent Link: https://hdl.handle.net/11104/0332508 - 5.0557875 - BTÚ 2023 RIV US eng J - Journal Article
Magalhaes-Novais, Silvia - Blecha, Jan - Naraine, Ravindra - Mikesova, Jana - Abaffy, Pavel - Pecinová, Alena - Miloševič, Mirko - Bohuslavová, Romana - Procházka, Jan - Khan, S. - Novotná, Eliška - Šindelka, Radek - Machan, R. - Dewerchin, M. - Vlčák, Erik - Kalucka, J. - Štemberková-Hubáčková, Soňa - Benda, A. - Goveia, J. - Mráček, Tomáš - Bařinka, Cyril - Carmeliet, P. - Neužil, Jiří - Rohlenová, Kateřina - Rohlena, Jakub
Mitochondrial respiration supports autophagy to provide stress resistance during quiescence.
Autophagy. Roč. 18, č. 10 (2022), s. 2409-2426. ISSN 1554-8627. E-ISSN 1554-8635
R&D Projects: GA ČR(CZ) GA20-18513S; GA ČR GA17-24441S; GA ČR(CZ) GA20-05942S; GA ČR(CZ) GA18-02550S; GA ČR(CZ) GX21-04607X; GA ČR(CZ) GA22-34507S; GA MZd(CZ) NV17-30138A; GA MZd(CZ) NV17-32727A; GA MZd(CZ) NU21-03-00545; GA MZd(CZ) NU20J-02-00035; GA MŠMT(CZ) LM2018129; GA MŠMT(CZ) LM2015040; GA MŠMT(CZ) LM2018126; GA MŠMT EF18_046/0015861; GA MŠMT(CZ) EF16_013/0001775; GA MŠMT(CZ) EF18_046/0016045
Research Infrastructure: Czech-BioImaging II - 90129; CCP II - 90126
Institutional support: RVO:86652036 ; RVO:68378050 ; RVO:67985823
Keywords : ATG4B * cell death * biosynthesis * electron transport chain
OECD category: Cell biology
Impact factor: 13.3, year: 2022
Method of publishing: Open access
https://www.tandfonline.com/doi/full/10.1080/15548627.2022.2038898
Permanent Link: http://hdl.handle.net/11104/0331732 - 6.0540647 - BTÚ 2021 RIV SE eng J - Journal Article
Naraine, Ravindra - Abaffy, Pavel - Šídová, Monika - Tománková, Silvie - Pocherniaieva, K. - Smolík, Ondřej - Kubista, Mikael - Pšenička, M. - Šindelka, Radek
NormQ: RNASeq normalization based on RT-qPCR derived size factors.
Computational and Structural Biotechnology Journal. Roč. 18, č. 2020 (2020), s. 1173-1181. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR GA17-24441S; GA ČR(CZ) GA19-11313S; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : seq * tomography * Transcriptomics * RNASeq * Normalization * TOMOSeq * DESeq * Median-of-ratios
OECD category: Biochemistry and molecular biology
Impact factor: 7.271, year: 2020
Method of publishing: Open access
https://www.sciencedirect.com/science/article/pii/S2001037020302737?via%3Dihub
Permanent Link: http://hdl.handle.net/11104/0318266 - 7.0517499 - BTÚ 2020 RIV US eng J - Journal Article
Abaffy, Pavel - Tománková, Silvie - Naraine, Ravindra - Kubista, Mikael - Šindelka, Radek
The role of nitric oxide during embryonic wound healing.
BMC Genomics. Roč. 20, č. 1 (2019), č. článku 815. ISSN 1471-2164. E-ISSN 1471-2164
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR GA17-24441S
Institutional support: RVO:86652036
Keywords : Xenopus laevis * Nitric oxide * Wound healing * Transcriptome
OECD category: Biochemistry and molecular biology
Impact factor: 3.594, year: 2019
Method of publishing: Open access
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6147-6
Permanent Link: http://hdl.handle.net/11104/0302837 - 8.0496977 - BTÚ 2019 RIV GB eng J - Journal Article
Šindelka, Radek - Abaffy, Pavel - Qu, Y. - Tománková, Silvie - Šídová, Monika - Naraine, Ravindra - Kolář, Michal - Peuchen, E. - Sun, L. - Dovichi, N. - Kubista, Mikael
Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan.
Scientific Reports. Roč. 8, MAY 29 2018 (2018), č. článku 8315. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA16-07500S; GA MŠMT(CZ) LH15074; GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036 ; RVO:68378050
Keywords : CELL MASS-SPECTROMETRY * BICOID MESSENGER-RNA * SAMPLE PREPARATION
OECD category: Other biological topics; Other biological topics (UMG-J)
Impact factor: 4.011, year: 2018
Permanent Link: http://hdl.handle.net/11104/0289597 - 9.0492386 - BTÚ 2019 RIV GB eng J - Journal Article
Bezawork-Geleta, A. - Wen, H. - Dong, L. F. - Yan, B. - Vider, J. - Boukalová, Štěpána - Krobová, Linda - Váňová, Kateřina - Zobalová, Renata - Sobol, Margaryta - Hozák, Pavel - Novais, Silvia Magalhaes - Caisova, V. - Abaffy, Pavel - Naraine, Ravindra - Pang, Y. - Zaw, T. - Zhang, P. - Šindelka, Radek - Kubista, Mikael - Zuryn, S. - Molloy, M. P. - Berridge, M.V. - Pacak, K. - Rohlena, Jakub - Park, S. - Neužil, Jiří
Alternative assembly of respiratory complex II connects energy stress to metabolic checkpoints.
Nature Communications. Roč. 9, JUN 7 2018 (2018), č. článku 2221. E-ISSN 2041-1723
R&D Projects: GA ČR GA15-02203S; GA MZd NV17-30138A; GA ČR GA17-20904S; GA MŠMT(CZ) LM2015062; GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR GA16-22823S
Institutional support: RVO:86652036 ; RVO:68378050
Keywords : ELECTRON-TRANSPORT CHAIN * PYRUVATE-KINASE M2 * MITOCHONDRIAL-DNA MUTATIONS
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (UMG-J)
Impact factor: 11.878, year: 2018
Permanent Link: http://hdl.handle.net/11104/0286410