Search results
- 1.0570259 - ÚFE 2024 RIV NL eng J - Journal Article
Průša, Jiří - Cifra, Michal
Electro-detachment of kinesin motor domain from microtubule in silico.
Computational and Structural Biotechnology Journal. Roč. 21, FEB 2023 (2023), s. 1349-1361. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GX20-06873X
Grant - others:Ministerstvo školství, mládeže a tělovýchovy - GA MŠk(CZ) LM2018140
Institutional support: RVO:67985882
Keywords : Electric field * Proteins * Tubulin * Microtubules * Molecular dynamics simulation
OECD category: Biophysics
Impact factor: 6, year: 2022
Method of publishing: Limited access
Permanent Link: https://hdl.handle.net/11104/0345167File Download Size Commentary Version Access UFE 0570259.pdf 3 7 MB Other require Scientific data in ASEP :
Raw data for the paper Molecular dynamics simulation trajectories dataset of a kinesin on tubulin heterodimers in electric field A2103 - 2.0543296 - ÚFE 2022 RIV SE eng J - Journal Article
Průša, Jiří - Taha Ayoub, A. - Chafai, Djamel Eddine - Havelka, Daniel - Cifra, Michal
Electro-opening of a microtubule lattice in silico.
Computational and Structural Biotechnology Journal. Roč. 19, March (2021), s. 1488-1496. ISSN 2001-0370. E-ISSN 2001-0370
R&D Projects: GA ČR(CZ) GX20-06873X
Grant - others:AV ČR(CZ) SAV-18-11
Program: Bilaterální spolupráce
Institutional support: RVO:67985882
Keywords : Electric field * Proteins * Tubulin * Microtubules * Molecular dynamics simulation
OECD category: Biophysics
Impact factor: 6.155, year: 2021
Method of publishing: Open access
https://doi.org/10.1016/j.csbj.2021.02.007
Permanent Link: http://hdl.handle.net/11104/0320529 - 3.0538173 - ÚFE 2021 RIV DE eng J - Journal Article
Průša, Jiří - Cifra, Michal
Dataset of molecular dynamics simulation trajectories of amino-acid solutions with various force fields, water models and modified force field parameters.
Data in Brief. Roč. 30, June (2020), č. článku 105483. ISSN 2352-3409
R&D Projects: GA ČR GA18-23597S
Grant - others:AV ČR(CZ) SAV-18-11; GA MŠk(CZ) LM2015042
Program: Bilaterální spolupráce
Institutional support: RVO:67985882
Keywords : Amino acid * Biomolecules * Dielectric spectroscopy * Force field * Molecular dynamics
OECD category: Electrical and electronic engineering
Method of publishing: Open access
https://doi.org/10.1016/j.dib.2020.105483
Permanent Link: http://hdl.handle.net/11104/0315994File Download Size Commentary Version Access UFE 0538173.pdf 1 383.4 KB Other require - 4.0538157 - ÚFE 2021 RIV NL eng J - Journal Article
Průša, Jiří - Cifra, Michal
Dependence of amino-acid dielectric relaxation on solute-water interaction: Molecular dynamics study.
Journal of Molecular Liquids. Roč. 303, April (2020), č. článku 112613. ISSN 0167-7322. E-ISSN 1873-3166
R&D Projects: GA ČR GA18-23597S
Grant - others:AV ČR(CZ) SAV-18-11
Program: Bilaterální spolupráce
Institutional support: RVO:67985882
Keywords : Amino acids * Biomolecules * Dielectric spectroscopy * Microwaves * Molecular dynamics simulation * Proteins
OECD category: Electrical and electronic engineering
Impact factor: 6.165, year: 2020
Method of publishing: Limited access
https://doi.org/10.1016/j.molliq.2020.112613
Permanent Link: http://hdl.handle.net/11104/0315979File Download Size Commentary Version Access UFE 0538157.pdf 1 1.6 MB Other require - 5.0518844 - ÚFE 2020 RIV GB eng J - Journal Article
Průša, Jiří - Cifra, Michal
Molecular dynamics simulation of the nanosecond pulsed electric field effect on kinesin nanomotor.
Scientific Reports. Roč. 9, č. 1 (2019), č. článku 19721. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR GA18-23597S
Institutional support: RVO:67985882
Keywords : Microtubules * Molecular dynamics * Electric field
OECD category: Biophysics
Impact factor: 3.998, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41598-019-56052-3.pdf
Permanent Link: http://hdl.handle.net/11104/0303872File Download Size Commentary Version Access UFE 0518844.pdf 2 3.3 MB Author’s postprint require - 6.0518300 - ÚFE 2020 RIV GB eng J - Journal Article
Marracino, P. - Havelka, Daniel - Průša, Jiří - Liberti, M. - Tuszyński, J.A. - Ayoub, A.T. - Apollonio, F. - Cifra, Michal
Tubulin response to intense nanosecond-scale electric field in molecular dynamics simulation.
Scientific Reports. Roč. 9, č. 1 (2019), č. článku 10477. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA17-11898S
Institutional support: RVO:67985882
Keywords : Electric fields * Molecular dynamics * Microwave heating
OECD category: Electrical and electronic engineering
Impact factor: 3.998, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41598-019-46636-4.pdf?origin=ppub
Permanent Link: http://hdl.handle.net/11104/0303460File Download Size Commentary Version Access UFE 0518300.pdf 9 6.9 MB Other require - 7.0499893 - ÚFE 2020 RIV US eng J - Journal Article
Cifra, Michal - Průša, Jiří - Havelka, Daniel - Krivosudský, Ondrej
Water models in molecular dynamics simulation prediction of dielectric properties of biomaterials.
IEEE Journal of Electromagnetics, RF and Microwaves in Medicine and Biology. Roč. 3, č. 2 (2019), s. 97-104. ISSN 2469-7249. E-ISSN 2469-7257
R&D Projects: GA ČR(CZ) GA15-17102S; GA ČR(CZ) GA17-11898S
Grant - others:AV ČR(CZ) SAV-18-11
Program: Bilaterální spolupráce
Institutional support: RVO:67985882
Keywords : biosensors * microwave sensors * dielectric measurement
OECD category: Electrical and electronic engineering
Method of publishing: Limited access
https://ieeexplore.ieee.org/document/8510803
Permanent Link: http://hdl.handle.net/11104/0292072File Download Size Commentary Version Access UFE 0499893.pdf 4 2.2 MB Other require - 8.0490476 - ÚFE 2019 RIV CH eng J - Journal Article
Havelka, Daniel - Krivosudský, Ondrej - Průša, Jiří - Cifra, Michal
Rational design of sensor for broadband dielectric spectroscopy of biomolecules.
Sensors and Actuators B - Chemical. Roč. 273, 10 November (2018), s. 62-69. E-ISSN 0925-4005
R&D Projects: GA ČR(CZ) GA15-17102S
Institutional support: RVO:67985882
Keywords : High-frequency biosensors * Molecular dynamics * Dielectric spectroscopy
OECD category: Electrical and electronic engineering
Impact factor: 6.393, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284708File Download Size Commentary Version Access UFE 0490476.pdf 10 1.2 MB Other require