Search results
- 1.0556414 - BTÚ 2022 RIV US eng J - Journal Article
Aliakbar Tehrani, Zahra - Rulíšek, Lubomír - Černý, Jiří
Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein.
Journal of Biomolecular Structure & Dynamics. JUN 2021, JUN 2021 (2021), č. článku 2021-07-12. ISSN 0739-1102
R&D Projects: GA MŠMT(CZ) EF16_013/0001777; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_013/0001776; GA ČR(CZ) GA20-08772S
Research Infrastructure: CESNET II - 90042
Institutional support: RVO:86652036 ; RVO:61388963
Keywords : NETWORK ANALYSIS * INTERFERON GENES * LIGAND * RECOGNITION
OECD category: Biochemistry and molecular biology
Impact factor: 5.235, year: 2021
Method of publishing: Limited access
https://www.tandfonline.com/doi/full/10.1080/07391102.2021.1942213
Permanent Link: http://hdl.handle.net/11104/0330635 - 2.0547237 - MBÚ 2022 RIV GB eng J - Journal Article
Schwarz, Marek - Vohradský, Jiří - Pánek, Josef
rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output.
Bioinformatics. Roč. 37, č. 17 (2021), s. 2755-2756. ISSN 1367-4803. E-ISSN 1460-2059
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:61388971
Keywords : RNA * BLAST * sequence
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 6.931, year: 2021
Method of publishing: Limited access
https://academic.oup.com/bioinformatics/article-abstract/37/17/2755/6125384?redirectedFrom=fulltext
Permanent Link: http://hdl.handle.net/11104/0323582 - 3.0541594 - MBÚ 2022 RIV CH eng J - Journal Article
Vohradský, Jiří - Schwarz, Marek - Ramaniuk, Olga - Ruiz-Larrabeiti, Olatz - Vaňková Hausnerová, Viola - Šanderová, Hana - Krásný, Libor
Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth.
Microorganisms. Roč. 9, č. 1 (2021). E-ISSN 2076-2607
R&D Projects: GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_013/0001777; GA ČR(CZ) GA20-12109S
Institutional support: RVO:61388971
Keywords : Bacillus subtilis * SigB * gene regulatory networks * computational modeling * promoter sequence analysis
OECD category: Biology (theoretical, mathematical, thermal, cryobiology, biological rhythm), Evolutionary biology
Impact factor: 4.926, year: 2021
Method of publishing: Open access
https://www.mdpi.com/2076-2607/9/1/112
Permanent Link: http://hdl.handle.net/11104/0319132 - 4.0535402 - BTÚ 2021 RIV GB eng J - Journal Article
Černý, Jiří - Božíková, Paulina - Svoboda, Jakub - Schneider, Bohdan
A unified dinucleotide alphabet describing both RNA and DNA structures.
Nucleic Acids Research. Roč. 48, č. 11 (2020), s. 6367-6381. ISSN 0305-1048. E-ISSN 1362-4962
R&D Projects: GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:86652036
Keywords : resolution structure * angstrom resolution * secondary structure * crystal-structure * building-blocks
OECD category: Biochemistry and molecular biology
Impact factor: 16.971, year: 2020
Method of publishing: Open access
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7293047/
Permanent Link: http://hdl.handle.net/11104/0313444 - 5.0534690 - BC 2021 RIV GB eng J - Journal Article
Novák, Petr - Neumann, Pavel - Macas, Jiří
Global analysis of repetitive DNA from unassembled sequence reads using RepeatExplorer2.
Nature Protocols. Roč. 15, č. 11 (2020), s. 3745-3776. ISSN 1754-2189. E-ISSN 1750-2799
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:60077344
Keywords : generation * evolution * elements
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 13.491, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41596-020-0400-y
Permanent Link: http://hdl.handle.net/11104/0312865 - 6.0533992 - BC 2021 RIV GB eng J - Journal Article
Novák, Petr - Guignard, M.S. - Neumann, Pavel - Kelly, L.J. - Mlinarec, J. - Koblížková, Andrea - Dodsworth, S. - Kovařík, Aleš - Pellicer, J. - Wang, W. - Macas, Jiří - Leitch, I. J. - Leitch, A.R.
Repeat-sequence turnover shifts fundamentally in species with large genomes.
Nature Plants. Roč. 6, č. 11 (2020), s. 1325-1329. ISSN 2055-026X. E-ISSN 2055-0278
R&D Projects: GA MŠMT(CZ) EF16_013/0001777; GA MŠMT(CZ) LM2015047
Institutional support: RVO:60077344 ; RVO:68081707
Keywords : beta regression * stomatal size * evolution * rates * photosynthesis
OECD category: Genetics and heredity (medical genetics to be 3); Plant sciences, botany (BFU-R)
Impact factor: 15.793, year: 2020
Method of publishing: Limited access
https://www.nature.com/articles/s41477-020-00785-x
Permanent Link: http://hdl.handle.net/11104/0312866 - 7.0532438 - BC 2021 RIV GB eng J - Journal Article
Vondrak, Tihana - Robledillo, Laura Avila - Novák, Petr - Koblížková, Andrea - Neumann, Pavel - Macas, Jiří
Characterization of repeat arrays in ultra-long nanopore reads reveals frequent origin of satellite DNA from retrotransposon-derived tandem repeats.
Plant Journal. Roč. 101, č. 2 (2020), s. 484-500. ISSN 0960-7412. E-ISSN 1365-313X
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:60077344
Keywords : nanopore sequencing * centromeres * heterochromatin * fluorescence in situ hybridization (FISH) * technical advance
OECD category: Genetics and heredity (medical genetics to be 3)
Impact factor: 6.486, year: 2020
Method of publishing: Open access
https://onlinelibrary.wiley.com/doi/10.1111/tpj.14546
Permanent Link: http://hdl.handle.net/11104/0310931 - 8.0532087 - MBÚ 2021 RIV CH eng J - Journal Article
Schwarz, Marek - Vohradský, Jiří - Modrák, Martin - Pánek, Josef
rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output.
Frontiers in genetics. Roč. 11, Jul 28 (2020), č. článku 675. E-ISSN 1664-8021
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:61388971
Keywords : RNA * sequence * database
OECD category: Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Impact factor: 4.599, year: 2020
Method of publishing: Open access
https://www.frontiersin.org/articles/10.3389/fgene.2020.00675/full
Permanent Link: http://hdl.handle.net/11104/0310693 - 9.0521414 - BTÚ 2020 RIV GB eng J - Journal Article
Zahradník, Jiří - Kolářová, Lucie - Peleg, Y. - Kolenko, Petr - Svidenská, S. - Charnavets, Tatsiana - Unger, T. - Sussman, J. L. - Schneider, Bohdan
Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1.
FEBS Journal. Roč. 286, č. 19 (2019), s. 3858-3873. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA ČR(CZ) GA16-20507S; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:86652036
Keywords : differentiation-associated gene * human-melanoma differentiation * transfer-pcr tpcr * crystal-structure * human interleukin-24
OECD category: Biochemistry and molecular biology
Impact factor: 4.392, year: 2019
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/full/10.1111/febs.14945
Permanent Link: http://hdl.handle.net/11104/0306043 - 10.0521326 - BTÚ 2020 RIV CH eng J - Journal Article
Peter, Emanuel K. - Černý, Jiří
A Hybrid Hamiltonian for the Accelerated Sampling along Experimental Restraints.
International Journal of Molecular Sciences. Roč. 20, č. 2 (2019), č. článku 370. E-ISSN 1422-0067
R&D Projects: GA MŠMT(CZ) LM2015047; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001777
Institutional support: RVO:86652036
Keywords : molecular-dynamics simulation * free-energy landscapes * monte-carlo simulations * replica-exchange method
OECD category: Biochemistry and molecular biology
Impact factor: 4.556, year: 2019
Method of publishing: Open access
https://www.mdpi.com/1422-0067/20/2/370
Permanent Link: http://hdl.handle.net/11104/0305957