Search results
- 1.0560263 - BTÚ 2023 RIV GB eng J - Journal Article
Koval'ová, Terezia - Koval, Tomáš - Stránský, Jan - Kolenko, Petr - Dušková, Jarmila - Švecová, Leona - Vodickova, P. - Spiwok, V. - Benešová, E. - Lipovová, P. - Dohnálek, Jan
The first structure-function study of GH151 alpha-l-fucosidase uncovers new oligomerization pattern, active site complementation, and selective substrate specificity.
FEBS Journal. Roč. 289, č. 16 (2022), č. článku 16387. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT EF15_003/0000447; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2018127
Institutional support: RVO:86652036
Keywords : active site complementation * crystal structure * gh151 * alpha-l-fucosidase
OECD category: Biochemistry and molecular biology
Impact factor: 5.4, year: 2022
Method of publishing: Limited access
https://febs.onlinelibrary.wiley.com/doi/10.1111/febs.16387
Permanent Link: https://hdl.handle.net/11104/0340729 - 2.0558380 - BTÚ 2023 RIV US eng J - Journal Article
Dohnálek, Jan - Skálová, Tereza
C-type lectin-(like) fold-Protein-protein interaction patterns and utilization.
Biotechnology Advances. Roč. 58, SEP 2022 (2022), č. článku 107944. ISSN 0734-9750. E-ISSN 1873-1899
R&D Projects: GA ČR(CZ) GA18-10687S; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036
Keywords : C-type lectin * C-type lectin-like * Protein-protein interaction
OECD category: Environmental biotechnology
Impact factor: 16, year: 2022
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S0734975022000404?via%3Dihub
Permanent Link: https://hdl.handle.net/11104/0340739 - 3.0556414 - BTÚ 2022 RIV US eng J - Journal Article
Aliakbar Tehrani, Zahra - Rulíšek, Lubomír - Černý, Jiří
Molecular dynamics simulations provide structural insight into binding of cyclic dinucleotides to human STING protein.
Journal of Biomolecular Structure & Dynamics. JUN 2021, JUN 2021 (2021), č. článku 2021-07-12. ISSN 0739-1102
R&D Projects: GA MŠMT(CZ) EF16_013/0001777; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LM2018131; GA MŠMT(CZ) EF16_013/0001776; GA ČR(CZ) GA20-08772S
Research Infrastructure: CESNET II - 90042
Institutional support: RVO:86652036 ; RVO:61388963
Keywords : NETWORK ANALYSIS * INTERFERON GENES * LIGAND * RECOGNITION
OECD category: Biochemistry and molecular biology
Impact factor: 5.235, year: 2021
Method of publishing: Limited access
https://www.tandfonline.com/doi/full/10.1080/07391102.2021.1942213
Permanent Link: http://hdl.handle.net/11104/0330635 - 4.0540782 - BTÚ 2021 RIV GB eng J - Journal Article
Kolenko, Petr - Svoboda, Jakub - Černý, Jiří - Charnavets, Tatsiana - Schneider, Bohdan
Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Acta Crystallographica Section D-Structural Biology. Roč. 76, DEC 1 2020 (2020), s. 1233-1243. ISSN 2059-7983. E-ISSN 2059-7983
R&D Projects: GA MŠMT(CZ) LM2018127; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LTAUSA18197; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : DNA structure * noncanonical base pairs * T– * T mismatch
OECD category: Biochemical research methods
Impact factor: 7.652, year: 2020
Method of publishing: Open access
https://scripts.iucr.org/cgi-bin/paper?S2059798320014151
Permanent Link: http://hdl.handle.net/11104/0318385 - 5.0538228 - BTÚ 2021 RIV GB eng J - Journal Article
Kouba, T. - Koval, Tomáš - Sudzinová, Petra - Pospíšil, Jiří - Brezovská, Barbora - Hnilicová, Jarmila - Šanderová, Hana - Janoušková, Martina - Šiková, Michaela - Halada, Petr - Sýkora, Michal - Barvík, I. - Nováček, J. - Trundová, Mária - Dušková, Jarmila - Skálová, Tereza - Chon, U. R. - Murakami, K. S. - Dohnálek, Jan - Krásný, Libor
Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase.
Nature Communications. Roč. 11, č. 1 (2020), č. článku 6419. E-ISSN 2041-1723
R&D Projects: GA MŠMT(CZ) LM2015043; GA ČR(CZ) GA20-12109S; GA ČR(CZ) GA20-07473S; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001776
Grant - others:OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447
Institutional support: RVO:86652036 ; RVO:61388971 ; RVO:68378050
Keywords : DNA-directed RNA Polymerase * Bacterial RNA * Sigma Factors
OECD category: Biophysics; Microbiology (MBU-M); Biochemistry and molecular biology (UMG-J)
Impact factor: 14.919, year: 2020
Method of publishing: Open access
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749160/
Permanent Link: http://hdl.handle.net/11104/0316062 - 6.0510112 - BTÚ 2020 RIV US eng J - Journal Article
Koval'ová, Terezia - Koval, Tomáš - Benešová, E. - Vodickova, P. - Spiwok, V. - Lipovová, P. - Dohnálek, Jan
Active site complementation and hexameric arrangement in the GH family 29, a structure-function study of alpha-l-fucosidase isoenzyme 1 from Paenibacillus thiaminolyticus.
Glycobiology. Roč. 29, č. 1 (2019), s. 59-73. ISSN 0959-6658. E-ISSN 1460-2423
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:86652036
Keywords : crystal structure * Paenibacillus thiaminolyticus * glycosidase * alpha-l-fucosidase
OECD category: Biochemistry and molecular biology
Impact factor: 4.060, year: 2019
Method of publishing: Open access
https://academic.oup.com/glycob/article/29/1/59/5078562
Permanent Link: http://hdl.handle.net/11104/0300667 - 7.0510107 - BTÚ 2020 RIV GB eng J - Journal Article
Koval, Tomáš - Švecová, Leona - Ostergaard, L. H. - Skálová, Tereza - Dušková, Jarmila - Hašek, Jindřich - Kolenko, Petr - Fejfarová, Karla - Stránský, Jan - Trundová, Mária - Dohnálek, Jan
Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer.
Scientific Reports. Roč. 9, SEP 23 2019 (2019), č. článku 13700. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) LM2015043
Grant - others:OP VVV - ELIBIO(XE) CZ.02.1.01/0.0/0.0/15_003/0000447
Institutional support: RVO:86652036
Keywords : MYROTHECIUM-VERRUCARIA * MULTICOPPER OXIDASES * DIOXYGEN REDUCTION
OECD category: Biochemistry and molecular biology
Impact factor: 3.998, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41598-019-50105-3
Permanent Link: http://hdl.handle.net/11104/0300661 - 8.0504953 - BTÚ 2020 RIV US eng J - Journal Article
Koval, Tomáš - Sudzinová, Petra - Perháčová, Terezia - Trundová, Mária - Skálová, Tereza - Fejfarová, Karla - Šanderová, Hana - Krásný, Libor - Dušková, Jarmila - Dohnálek, Jan
Domain structure of HelD, an interaction partner of Bacillus subtilis RNA polymerase.
FEBS Letters. Roč. 593, č. 9 (2019), s. 996-1005. ISSN 0014-5793. E-ISSN 1873-3468
R&D Projects: GA ČR GA15-05228S; GA ČR GA19-12956S; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LM2015055; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT EF15_003/0000447
Institutional support: RVO:86652036 ; RVO:61388971
Keywords : Bacillus subtilis * HelD * RNAP * SAXS
OECD category: Biochemistry and molecular biology; Microbiology (MBU-M)
Impact factor: 3.057, year: 2019
Method of publishing: Open access
https://febs.onlinelibrary.wiley.com/doi/full/10.1002/1873-3468.13385
Permanent Link: http://hdl.handle.net/11104/0296499 - 9.0501629 - BTÚ 2019 RIV GB eng J - Journal Article
Bařinka, Cyril - Nováková, Zora - Hin, N. - Bím, Daniel - Ferraris, D. V. - Duvall, B. - Kabarriti, G. - Tsukamoto, R. - Buděšínský, Miloš - Motlová, Lucia - Rojas, C. - Slusher, B. S. - Rokob, T. A. - Rulíšek, Lubomír - Tsukamoto, T.
Structural and computational basis for potent inhibition of glutamate carboxypeptidase II by carbamate-based inhibitors.
Bioorganic & Medicinal Chemistry. Roč. 27, č. 2 (2019), s. 255-264. ISSN 0968-0896. E-ISSN 1464-3391
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) ED1.1.00/02.0109; GA ČR(CZ) GA17-24155S
Grant - others:Ga MŠk(CZ) LM2015070
Institutional support: RVO:86652036 ; RVO:61388963
Keywords : Glutamate carboxypeptidase II * Prostate-specific membrane antigen * Crystal structure
OECD category: Biochemistry and molecular biology; Physical chemistry (UOCHB-X)
Impact factor: 3.073, year: 2019
Permanent Link: http://hdl.handle.net/11104/0293626 - 10.0499346 - BTÚ 2019 RIV US eng J - Journal Article
Nakajima, R. - Nováková, Zora - Tueckmantel, W. - Motlová, Lucia - Bařinka, Cyril - Kozikowski, A. P.
2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands for Potential Use as Theranostics.
ACS Medicinal Chemistry Letters. Roč. 9, č. 11 (2018), s. 1099-1104. ISSN 1948-5875
R&D Projects: GA MŠMT(CZ) EF16_013/0001776; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) ED2.1.00/19.0390
Institutional support: RVO:86652036
Keywords : Theranostic * prostate cancer * PSMA ligands * PET imaging
OECD category: Biochemistry and molecular biology
Impact factor: 3.737, year: 2018
Permanent Link: http://hdl.handle.net/11104/0291567