Search results
- 1.0583805 - BC 2024 RIV GB eng J - Journal Article
Kavagutti, Vinicius Silva - Bulzu, Paul-Adrian - Chiriac, Maria-Cecilia - Salcher, Michaela M. - Mukherjee, Indranil - Shabarova, Tatiana - Grujčič, Vesna - Mehrshad, Maliheh - Kasalický, Vojtěch - Andrei, A.S. - Jezberová, Jitka - Seďa, Jaromír - Rychtecký, Pavel - Znachor, Petr - Šimek, Karel - Ghai, Rohit
High-resolution metagenomic reconstruction of the freshwater spring bloom.
Microbiome. Roč. 11, č. 1 (2023), č. článku 15. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA21-21990S; GA ČR(CZ) GA19-23469S; GA ČR GA22-03662S; GA ČR(CZ) GA19-23261S; GA MŠMT(CZ) EF16_025/0007417
Institutional support: RVO:60077344
Keywords : bacterioplankton populations * seasonal succession * giant virus * chrysochromulina
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-022-01451-4
Permanent Link: https://hdl.handle.net/11104/0351803 - 2.0583794 - BC 2024 RIV GB eng J - Journal Article
Park, Hongjae - Shabarova, Tatiana - Salcher, Michaela M. - Kosová, Lenka - Rychtecký, Pavel - Mukherjee, Indranil - Šimek, Karel - Porcal, Petr - Seďa, Jaromír - Znachor, Petr - Kasalický, Vojtěch
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model.
Microbiome. Roč. 11, č. 1 (2023), č. článku 112. ISSN 2049-2618. E-ISSN 2049-2618
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GA19-00113S; GA MŠMT(CZ) EF16_025/0007417; GA ČR GA22-33245S; GA ČR GF22-35826K
Institutional support: RVO:60077344
Keywords : rna gene-sequences * niche separation * Freshwater reservoirs * Microbial communities * Spatiotemporal dynamics * Microdiversity * PEG model
OECD category: Microbiology
Impact factor: 15.5, year: 2022
Method of publishing: Open access
https://doi.org/10.1186/s40168-023-01522-0
Permanent Link: https://hdl.handle.net/11104/0351793 - 3.0552451 - BC 2022 RIV GB eng J - Journal Article
Shabarova, Tatiana - Salcher, Michaela M. - Porcal, Petr - Znachor, Petr - Nedoma, Jiří - Grossart, H.P. - Seďa, Jaromír - Hejzlar, Josef - Šimek, Karel
Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession.
Nature Microbiology. Roč. 6, č. 4 (2021), s. 479-+. ISSN 2058-5276. E-ISSN 2058-5276
R&D Projects: GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * ribosomal-rna * peg-model * lake * assemblages * phosphorus * projections * reservoirs * emissions * silva
OECD category: Microbiology
Impact factor: 30.964, year: 2021
Method of publishing: Limited access
https://doi.org/10.1038/s41564-020-00852-1
Permanent Link: http://hdl.handle.net/11104/0327580File Download Size Commentary Version Access SHABAROVA NatureMicrobiol 2021.pdf 0 13.8 MB Author´s preprint require - 4.0546949 - MBÚ 2022 RIV US eng J - Journal Article
Mujakić, Izabela - Andrei, Adrian-Stefan - Shabarova, Tatiana - Kolesár Fecskeová, Lívia - Salcher, Michaela M. - Piwosz, Kasia - Ghai, Rohit - Koblížek, Michal
Common Presence of Phototrophic Gemmatimonadota in Temperate Freshwater Lakes.
mSystems. Roč. 6, č. 2 (2021), č. článku e01241-20. ISSN 2379-5077. E-ISSN 2379-5077
R&D Projects: GA ČR(CZ) GX19-28778X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA19-23469S; GA ČR(CZ) GX20-12496X
Grant - others:AV ČR(CZ) MSM200961801
Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : Gemmatimonadota * Gemmatimonadetes * anoxygenic phototrophs * aquatic bacteria * MAGs * metagenome * photosynthesis gene cluster * freshwater ecology * card-fish
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 7.328, year: 2021
Method of publishing: Open access
https://journals.asm.org/doi/10.1128/mSystems.01241-20
Permanent Link: http://hdl.handle.net/11104/0323331 - 5.0539257 - BC 2021 RIV GB eng J - Journal Article
Mukherjee, Indranil - Salcher, Michaela M. - Andrei, Adrian-Stefan - Kavagutti, Vinicius Silva - Shabarova, Tatiana - Grujcic, V. - Haber, Markus - Layoun, Paul - Hodoki, Y. - Nakano, S. - Šimek, Karel - Ghai, Rohit
A freshwater radiation of diplonemids.
Environmental Microbiology. Roč. 22, č. 11 (2020), s. 4658-4668. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GX20-12496X; GA ČR(CZ) GA17-04828S; GA ČR(CZ) GA19-23469S
Grant - others:AV ČR(CZ) MSM200961801
Program: Program na podporu mezinárodní spolupráce začínajících výzkumných pracovníků
Institutional support: RVO:60077344
Keywords : multiple sequence alignment * microbial eukaryotes * marine * community * diversity
OECD category: Microbiology
Impact factor: 5.491, year: 2020
Method of publishing: Open access
https://doi.org/10.1111/1462-2920.15209
Permanent Link: http://hdl.handle.net/11104/0316927File Download Size Commentary Version Access MUKHERJEE Environ Microbiol 2020.pdf 0 1 MB Author´s preprint open-access - 6.0531454 - MBÚ 2021 RIV US eng J - Journal Article
Piwosz, Kasia - Shabarova, Tatiana - Pernthaler, J. - Posch, T. - Šimek, Karel - Porcal, Petr - Salcher, Michaela M.
Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations.
mSphere. Roč. 5, č. 2 (2020), č. článku e00052-20. ISSN 2379-5042. E-ISSN 2379-5042
R&D Projects: GA ČR(CZ) GJ18-14095Y; GA ČR(CZ) GJ20-23718Y; GA ČR(CZ) GA13-00243S; GA ČR(CZ) GA19-00113S; GA ČR(CZ) GA19-23469S
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : CARD-FISH * amplicon sequencing * bacterial communities
OECD category: Microbiology; Microbiology (BC-A)
Impact factor: 4.389, year: 2020
Method of publishing: Open access
https://msphere.asm.org/content/5/2/e00052-20
Permanent Link: http://hdl.handle.net/11104/0310116 - 7.0495997 - MBÚ 2019 RIV GB eng J - Journal Article
Piwosz, Kasia - Shabarova, Tatiana - Tomasch, J. - Šimek, Karel - Kopejtka, Karel - Kahl, S. - Pieper, D. H. - Koblížek, Michal
Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS).
The ISME Journal. Roč. 12, č. 11 (2018), s. 2640-2654. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR GA15-12197S; GA ČR GA13-11281S; GA ČR(CZ) GA13-00243S; GA MŠMT(CZ) LO1416; GA MŠMT(CZ) ED2.1.00/19.0392
Institutional support: RVO:61388971 ; RVO:60077344
Keywords : FRESH-WATER RESERVOIR= * SPRING PHYTOPLANKTON BLOOM * IN-SITU HYBRIDIZATION
OECD category: Microbiology
Impact factor: 9.493, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288835File Download Size Commentary Version Access 135 Determining lineage-specific bacterial growth curves.pdf 5 2.7 MB Publisher’s postprint require - 8.0495062 - BC 2019 RIV US eng J - Journal Article
Šimek, Karel - Grujčič, Vesna - Hahn, M.W. - Horňák, Karel - Jezberová, Jitka - Kasalický, Vojtěch - Nedoma, Jiří - Salcher, Michaela M. - Shabarova, Tatiana
Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates.
Limnology and Oceanography. Roč. 63, č. 1 (2018), s. 484-502. ISSN 0024-3590. E-ISSN 1939-5590
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:60077344
Keywords : spring phytoplankton bloom * in-situ hybridization * bacterioplankton populations * metazoan zooplankton * genus limnohabitans
OECD category: Microbiology
Impact factor: 4.325, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288084 - 9.0495058 - BC 2019 RIV GB eng J - Journal Article
Grujčič, Vesna - Nuy, J.K. - Salcher, Michaela M. - Shabarova, Tatiana - Kasalický, Vojtěch - Boenigk, J. - Jensen, M. - Šimek, Karel
Cryptophyta as major bacterivores in freshwater summer plankton.
The ISME Journal. Roč. 12, č. 7 (2018), s. 1668-1681. ISSN 1751-7362. E-ISSN 1751-7370
R&D Projects: GA ČR(CZ) GA13-00243S
Institutional support: RVO:60077344
Keywords : in-situ hybridization * ribosomal-rna genes * community composition * protist diversity * functional diversity
OECD category: Microbiology
Impact factor: 9.493, year: 2018
Permanent Link: http://hdl.handle.net/11104/0288083 - 10.0479532 - BC 2018 RIV GB eng J - Journal Article
Shabarova, Tatiana - Kasalický, Vojtěch - Šimek, Karel - Nedoma, Jiří - Znachor, Petr - Posch, T. - Pernthaler, J. - Salcher, Michaela M.
Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach.
Environmental Microbiology. Roč. 19, č. 3 (2017), s. 1296-1309. ISSN 1462-2912. E-ISSN 1462-2920
R&D Projects: GA ČR(CZ) GA13-00243S; GA ČR GA15-12197S; GA ČR GA15-09721S
Institutional support: RVO:60077344
Keywords : dissolved organic-matter * in-situ hybridization * bacterial community composition * polynucleobacter-necessarius
OECD category: Microbiology
Impact factor: 4.974, year: 2017
Permanent Link: http://hdl.handle.net/11104/0275522