Search results
- 1.0542387 - MBÚ 2022 RIV US eng J - Journal Article
Kukačka, Zdeněk - Rosůlek, Michal - Jelínek, Jan - Slavata, Lukáš - Kavan, Daniel - Novák, Petr
LinX: A Software Tool for Uncommon Cross-Linking Chemistry.
Journal of Proteome Research. Roč. 20, č. 4 (2021), s. 2021-2027. ISSN 1535-3893. E-ISSN 1535-3907
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS
Institutional support: RVO:61388971
Keywords : mass spectrometry * high resolution * chemical cross-linking * proteins
OECD category: Biochemistry and molecular biology
Impact factor: 5.370, year: 2021
Method of publishing: Open access
https://pubs.acs.org/doi/10.1021/acs.jproteome.0c00858
Permanent Link: http://hdl.handle.net/11104/0319810 - 2.0531921 - MBÚ 2021 RIV NL eng J - Journal Article
Fiala, Jan - Kukačka, Zdeněk - Novák, Petr
Influence of cross-linker polarity on selectivity towards lysine side chains.
Journal of Proteomics. Roč. 218, APR 30 (2020), č. článku 103716. ISSN 1874-3919. E-ISSN 1876-7737
R&D Projects: GA ČR(CZ) GA19-16084S; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
EU Projects: European Commission(XE) 731077 - EU_FT-ICR_MS; European Commission(XE) 823839 - EPIC-XS; European Commission(XE) 731077 - EU_FT-ICR_MS
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971
Keywords : Structural mass spectrometry * Protein structure * Chemical cross-linking
OECD category: Biochemistry and molecular biology
Impact factor: 4.044, year: 2020
Method of publishing: Limited access
https://www.sciencedirect.com/science/article/pii/S1874391920300841
Permanent Link: http://hdl.handle.net/11104/0310557 - 3.0519026 - MBÚ 2020 RIV GB eng J - Journal Article
Masson, G.R. - Burke, J.E. - Ahn, N. G. - Anand, G.S. - Borchers, Ch. - Brier, S. - Bou-Assaf, G.M. - Engen, J.R. - Englander, S.W. - Faber, J. - Garlish, R. - Griffin, P.R. - Gross, M.L. - Guttman, M. - Hamuro, Y. - Heck, A.J.R. - Houde, D. - Iacob, R.E. - Jorgensen, T.J.D. - Kaltashov, I.A. - Klinman, J.P. - Konermann, L. - Man, Petr - Mayne, L. - Pascal, B.D. - Reichmann, D. - Skehel, M. - Snijder, J. - Strutzenberg, T.S. - Underbakke, E.S. - Wagner, C. - Wales, T.E. - Walters, B.T. - Weis, D.D. - Wilson, D.J. - Wintrode, P.L. - Zhang, Z.Q. - Zheng, J. - Schriemer, D.C. - Rand, K.D.
Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments.
Nature Methods. Roč. 16, č. 7 (2019), s. 595-602. ISSN 1548-7091. E-ISSN 1548-7105
R&D Projects: GA MŠMT(CZ) LD15089
Institutional support: RVO:61388971
Keywords : electron-transfer dissociation * capture dissociation * structural dynamics
OECD category: Biochemistry and molecular biology
Impact factor: 30.822, year: 2019
Method of publishing: Open access
https://www.nature.com/articles/s41592-019-0459-y
Permanent Link: http://hdl.handle.net/11104/0304037File Download Size Commentary Version Access 163_Recommendations for performing interpreting and reporting.pdf 4 1.8 MB Publisher’s postprint require - 4.0518869 - MBÚ 2020 RIV US eng J - Journal Article
Iacobucci, C. - Kukačka, Zdeněk - Novák, Petr … Total 74 authors
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.
Analytical Chemistry. Roč. 91, č. 11 (2019), s. 6953-6961. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA MŠMT(CZ) LD15089
Institutional support: RVO:61388971
Keywords : distance restraints * strategy * proteins
OECD category: Biochemistry and molecular biology
Impact factor: 6.785, year: 2019
Method of publishing: Open access
https://pubs.acs.org/doi/pdf/10.1021/acs.analchem.9b00658
Permanent Link: http://hdl.handle.net/11104/0303889File Download Size Commentary Version Access 163_First Community-Wide Comparative Cross-Linking.pdf 2 2.3 MB Publisher’s postprint require - 5.0518861 - MBÚ 2020 RIV US eng J - Journal Article
Moller, I.R. - Slivacka, M. - Hausner, Jiří - Nielsen, A.K. - Pospíšilová, Eliška - Merkle, P.S. - Lišková, Růžena - Polák, Marek - Loland, C.J. - Kádek, Alan - Man, Petr - Rand, K.D.
Improving the Sequence Coverage of Integral Membrane Proteins during Hydrogen/Deuterium Exchange Mass Spectrometry Experiments.
Analytical Chemistry. Roč. 91, č. 17 (2019), s. 10970-10978. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA16-20860S; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LD15089
Institutional support: RVO:61388971
Keywords : aspartic protease nepenthesin-1 * x-ray-structure * conformational-analysis
OECD category: Biochemistry and molecular biology
Impact factor: 6.785, year: 2019
Method of publishing: Limited access
https://pubs.acs.org/doi/10.1021/acs.analchem.9b00973
Permanent Link: http://hdl.handle.net/11104/0303882 - 6.0505686 - MBÚ 2020 RIV CH eng J - Journal Article
Adámková, Ljubina - Kvíčalová, Zuzana - Rozbeský, Daniel - Kukačka, Zdeněk - Adámek, David - Cebecauer, Marek - Novák, Petr
Oligomeric Architecture of Mouse Activating Nkrp1 Receptors on Living Cells.
International Journal of Molecular Sciences. Roč. 20, č. 8 (2019), č. článku 1884. E-ISSN 1422-0067
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
Research Infrastructure: CIISB - 90043
Institutional support: RVO:61388971 ; RVO:61388955
Keywords : Nkrp1 * dimerization * Forster resonance energy transfer
OECD category: Biochemistry and molecular biology; Physical chemistry (UFCH-W)
Impact factor: 4.556, year: 2019
Method of publishing: Open access
https://www.mdpi.com/1422-0067/20/8/1884
Permanent Link: http://hdl.handle.net/11104/0297120File Download Size Commentary Version Access 0505686.pdf 2 3 MB open access Publisher’s postprint open-access - 7.0496286 - MBÚ 2019 RIV US eng J - Journal Article
Darebná, Petra - Špička, J. - Kučera, R. - Topolčan, O. - Navrátilová, E. - Růžička, V. - Volný, Michael - Novák, Petr - Pompach, Petr
Detection and Quantification of Carbohydrate-Deficient Transferrin by MALDI-Compatible Protein Chips Prepared by Ambient Ion Soft Landing.
Clinical Chemistry. Roč. 64, č. 9 (2018), s. 1319-1326. ISSN 0009-9147. E-ISSN 1530-8561
R&D Projects: GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:61388971
Keywords : MASS-SPECTROMETRY * ALCOHOL-CONSUMPTION * SERUM TRANSFERRIN
OECD category: Biochemistry and molecular biology
Impact factor: 6.916, year: 2018
Permanent Link: http://hdl.handle.net/11104/0289108File Download Size Commentary Version Access 163_Detection and Quantification of Carbohydrate-Deficient.pdf 6 1.9 MB Publisher’s postprint require - 8.0491223 - ÚMG 2019 RIV GB eng J - Journal Article
Škerlová, Jana - Bláha, J. - Pachl, Petr - Hofbauerová, Kateřina - Kukačka, Zdeněk - Man, Petr - Pompach, Petr - Novák, Petr - Otwinowski, Z. - Brynda, Jiří - Vaněk, O. - Řezáčová, Pavlína
Crystal structure of native beta-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide.
FEBS Journal. Roč. 285, č. 3 (2018), s. 580-598. ISSN 1742-464X. E-ISSN 1742-4658
R&D Projects: GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) LO1304; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) LQ1604; GA MŠMT LG14009; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) LD15089; GA ČR(CZ) GA15-05677S; GA ČR(CZ) GA16-24309S; GA ČR(CZ) GA15-15181S
Institutional support: RVO:68378050 ; RVO:61388971
Keywords : active pocket * carbohydrate biotechnology * glycosylation * mass spectrometry * propeptide * X-ray crystallography
OECD category: Biochemistry and molecular biology; Biochemistry and molecular biology (MBU-M)
Impact factor: 4.739, year: 2018
Permanent Link: http://hdl.handle.net/11104/0285263 - 9.0489608 - MBÚ 2019 RIV US eng J - Journal Article
Rozbeský, Daniel - Rosůlek, Michal - Kukačka, Zdeněk - Chmelík, Josef - Man, Petr - Novák, Petr
Impact of Chemical Cross-Linking on Protein Structure and Function.
Analytical Chemistry. Roč. 90, č. 2 (2018), s. 1104-1113. ISSN 0003-2700. E-ISSN 1520-6882
R&D Projects: GA ČR(CZ) GA16-24309S; GA MŠMT(CZ) LH15010; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LO1509; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) LM2015043; GA MŠMT(CZ) ED1.1.00/02.0109; GA MŠMT(CZ) BM1403
EU Projects: European Commission(CZ) BM1403
Institutional support: RVO:61388971
Keywords : TRANSFORM MASS-SPECTROMETRY * DISTANCE GEOMETRY METHOD * TOP-DOWN APPROACH
OECD category: Biochemistry and molecular biology
Impact factor: 6.350, year: 2018
Permanent Link: http://hdl.handle.net/11104/0284071File Download Size Commentary Version Access 163_Impact of Chemical Cross-Linking on Protein.pdf 3 5.5 MB Publisher’s postprint require - 10.0477945 - MBÚ 2018 RIV GB eng J - Journal Article
Mašín, Jiří - Roderová, Jana - Osičková, Adriana - Novák, Petr - Bumba, Ladislav - Fišer, Radovan - Šebo, Peter - Osička, Radim
The conserved tyrosine residue 940 plays a key structural role in membrane interaction of Bordetella adenylate cyclase toxin.
Scientific Reports. Roč. 7, AUG 24 (2017), s. 1-14, č. článku 9330. ISSN 2045-2322. E-ISSN 2045-2322
R&D Projects: GA ČR(CZ) GA16-05919S; GA ČR GA15-09157S; GA ČR(CZ) GA15-11851S; GA ČR(CZ) GA13-14547S; GA MŠMT(CZ) LM2015064; GA MŠMT(CZ) LD15089; GA MŠMT(CZ) LQ1604; GA MŠMT(CZ) ED1.1.00/02.0109
Institutional support: RVO:61388971
Keywords : PERTUSSIS CYAA * BENZODIAZEPINE-RECEPTOR * ESCHERICHIA-COLI
OECD category: Microbiology
Impact factor: 4.122, year: 2017
Permanent Link: http://hdl.handle.net/11104/0274193File Download Size Commentary Version Access 125_The conserved tyrosine residue 940 plays.pdf 5 4.4 MB Publisher’s postprint require